Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq17 159 4e-34 >seq17 Length=1338299 Score = 159 bits (176), Expect = 4e-34 Identities = 344/512 (67%), Gaps = 7/512 (1%) Strand=Plus/Plus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| ||||| ||||| |||| || | || ||||| | | | || ||||| Sbjct 167175 CCACATGTCAAATTGGAGTTGCCCTTTTGAGACAGGTGATCCTTGATAAGTAGAGTATGG 167234 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 || || ||| ||||||||| | || || ||||| || || | || |||||||| || Sbjct 167235 TCCATCTTTCTCAGCCAATTCGCAACTGGCTTCGAGAGCAGCATAGTAGATTGTTTCGAA 167294 Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 118522 ||||| |||| | |||| | || ||| || | || || ||| || || Sbjct 167295 GATGCGCTTGTTCAAATCTCTGGCTCCTTCTGAAGTGAATGGGAATCTCATCAACATGAA 167354 Query 118523 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCG 118582 ||| ||||| ||||| || || || |||||||| ||||| | ||| || || || || Sbjct 167355 ACAATCAGCGAGTCCTTGAACTCCAAGTCCAATTGGACGATGACGCATGTTCGAGTTACG 167414 Query 118583 AGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 118642 || || || || ||| |||| |||||| | | | || |||||||| || | || Sbjct 167415 TGCTTCTTCAACTGGGTAATAATTGACATCGATGATCTTGTTCAGATTTTTCGTTATCAC 167474 Query 118643 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTT 118702 || || | ||| |||||| | | ||||||| | |||| | ||||| | | Sbjct 167475 TTTGGTAACCTCAGCAAGCTTCTTGAAATCAAACGTCT---TCTCAGGAGTGACAAA--T 167529 Query 118703 AGGA--AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCT 118760 || || ||||| || || ||||| || |||| | ||||||| | ||| |||||| Sbjct 167530 CGGTTGAGAGCGATAGAAGCAAGATTGCAGACAGCGATCTCATCTGGAGCAGAGTACTCG 167589 Query 118761 ATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 118820 || ||||||||||||| || || | || ||||| || | ||| | |||||| ||||| Sbjct 167590 ATGATTTCCGTGCACAGATTGGAGCATTTGATGGTTCCGAGGTTTTGTTGATTGGACTTG 167649 Query 118821 GTGTTACACGCATCCTTGTAAAGCATGTATGG 118852 || ||||||||||| |||||||| Sbjct 167650 CGATTGGCAGCATCCTTGTAGGTGATGTATGG 167681 Score = 154 bits (170), Expect = 2e-32 Identities = 299/440 (68%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || |||||||| |||| |||||| | || | |||||||||| | Sbjct 166620 GTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATACC 166679 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 || | | |||| | ||||| | ||| | ||| |||||||||||||| ||| Sbjct 166680 GGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGATTGATCGATGAATGCTCC 166739 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 ||||| || ||||| || || | |||||| ||| ||||| || || | |||||| Sbjct 166740 ACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCATACTGTGCGGTAGAG 166799 Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 | ||| || ||||||||||| | ||| ||||| ||||||||| ||| | || Sbjct 166800 TTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGATCCA---TTGTTGGCAAT 166856 Query 118082 GAG---ATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 118138 ||| | |||||| || | ||||| | || ||| | ||||| | | || Sbjct 166857 GAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAATCCTTGAGCATGTG 166916 Query 118139 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 118198 ||| |||| || ||||| | ||| |||| |||||||||| ||||| Sbjct 166917 TGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAGATATTGGATGTGTA 166976 Query 118199 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 118258 |||||||| | || ||||| || | ||||| || ||||| || || ||||| ||||| Sbjct 166977 TGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCAGTTGGCATCGGTGC 167036 Query 118259 CATGAGAAGGCTGTTACGGA 118278 ||| ||||| ||||| |||| Sbjct 167037 CATTAGAAGACTGTTGCGGA 167056 Score = 93.3 bits (102), Expect = 5e-14 Identities = 351/539 (65%), Gaps = 29/539 (5%) Strand=Plus/Plus Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 119085 ||| ||| || || ||||||||||| ||||| | |||||| || ||| | || ||| Sbjct 168085 CCTTCTCGACACGTTTCATGAAGAGATCTGGAACCCAGAGGGCAAGGAACAAGTCACGAG 168144 Query 119086 AGCGAGCTTCTTCATCCCCC-TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCG 119144 ||| ||||||| || || || | || | | | || || | || || ||| Sbjct 168145 CGCGCTCTTCTTCTGGGCCAGTGTTTTTG-CGGAGAGCGACGAACTCGAAGACGTCGGCG 168203 Query 119145 TGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAGCCTGGTTT 119198 ||||| || || || || | |||| || | ||| |||| || | || | Sbjct 168204 TGCCATGGCTCAAGATAGATAGCGAATG-CACCTG--GACGCTTGTTTCCTCCTTGATCG 168260 Query 119199 ACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCA 119258 ||||| | |||||| ||| | ||||| ||||||||||| | |||| ||| ||| Sbjct 168261 ACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGGAATAAGTCCATTGGAAGTTCCA 168320 Query 119259 TTTGTCCCCCGAATACGAGACTTAT----TGGCTCTGACATCGTGGATGTGCATACCAAT 119314 || || || || |||| || |||| | | | ||||| | | |||||| Sbjct 168321 TTGGTTCCGGCGAT----GACTGATCCGGTGGCACGAATCTTGTGGACATTGAGACCAAT 168376 Query 119315 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 119374 || || || | ||| ||||| | || |||| | ||| || ||||||| || || Sbjct 168377 TCCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCAGAGTGTCGTAGATTCCGAGAAT 168436 Query 119375 CGAGTC-ACCCTTATTTGCGATGAGGAAGCAGCTC---GACATTTGAGGCCTGGGTGTAC 119430 ||| || | || || || |||| ||| ||| | ||||| || || | || | Sbjct 168437 CGAATCTTCGCTCAT---CG-TGAGCAAGAAGCACGATGACATCTGTGGACGACACGTTC 168492 Query 119431 CAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTTGTCGTAG 119489 ||| ||||||||||||||||| || || | | |||| || |||||| | ||| Sbjct 168493 CAGAGTTGAAGAGAGTTGGTGATGCATGTGT-CATGTACCGTTCCGACATCAAATTGTAT 168551 Query 119490 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 || || | | |||| | |||||| | |||||||| ||||| | ||| ||||| ||||| Sbjct 168552 GTTTCGATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATAGCGACACGCATCAACAT 168610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618409650895800