Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq17 127 2e-24 >seq17 Length=1338299 Score = 127 bits (140), Expect = 2e-24 Identities = 350/534 (66%), Gaps = 7/534 (1%) Strand=Plus/Minus Query 104909 CAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 104968 |||| ||| ||||| |||||||| ||||| || || || | ||| ||| Sbjct 167699 CAAATCGAAACTGGACTTCCATACATCACCTACAAGGATGCTGCCAATCGCAAGTCCAAT 167640 Query 104969 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACA 105028 ||| | || | || ||||| | |||||||| || || |||||| | || | | Sbjct 167639 CAACAAAACCTCGGAACCATCAAATGCTCCAATCTGTGCACGGAAATCATCGAGTACTCT 167580 Query 105029 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 105088 | |||||||| ||||| || || || || || ||||||||| | | ||| | Sbjct 167579 GCTCCAGATGAGATCGCTGTCTGCAATCTTGCTTCTATCGCTCTCAACCGATTTGTCACT 167520 Query 105089 CCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAA 105148 || |||| |||| ||||||| | || || || ||||| ||| | || ||| Sbjct 167519 CCTGAGA---AGACGTTTGATTTCAAGAAGCTTGCTGAGGTTACCAAAGTGATAACGAAA 167463 Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 105208 || || |||| | || ||| |||| |||||| ||||| || ||||| || || Sbjct 167462 AATCTGAACAAGATCATCGATGTCAATTATTACCCAGTTGAAGAAGCACGTAACTCGAAC 167403 Query 105209 ATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGT 105268 ||| | || ||||||||||| || || ||||| || ||||| ||| ||||| ||| Sbjct 167402 ATGCGTCATCGTCCAATTGGACTTGGAGTTCAAGGACTCGCTGATTGTTTCAT--GTTGA 167345 Query 105269 CGCCA--CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCA 105326 | | | |||| ||| || | ||| | || | || |||||| || || || | Sbjct 167344 TGAGATTCCCATTCACTTCAGAAGGAGCCAGAGATTTGAACAAGCGCATCTTCGAAACAA 167285 Query 105327 TGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAA 105386 | || | || ||||| || || |||| || ||||| ||| ||||| ||||| | Sbjct 167284 TCTACTATGCTGCTCTCGAAGCCAGTTGCGAATTGGCTGAGAAAGATGGACCATACTCTA 167225 Query 105387 CCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAG 105440 | | | | || || || | ||| ||||| || |||||||| ||||||| || Sbjct 167224 CTTATCAAGGATCACCTGTCTCAAAAGGGCAACTCCAATTTGACATGTGGGGAG 167171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583236704038200