Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq17 145 8e-30 seq7 98.7 1e-15 seq202 87.8 2e-12 >seq17 Length=1338299 Score = 145 bits (160), Expect = 8e-30 Identities = 374/567 (66%), Gaps = 2/567 (0%) Strand=Plus/Plus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || || ||||||||| |||||||||| ||| || | |||||||| || | | Sbjct 168042 AGTCCTGGGCACTCGCATGGGCACATCAACGACCAATCTTGATCCTTCTCGACACGTTTC 168101 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 |||||||| || || | ||| ||||| ||| | ||| || ||| ||| || | | Sbjct 168102 ATGAAGAGATCTGGAACCCAGAGGGCAAGGAACAAGTCACGAGCGCGC-TCTTCTTCTGG 168160 Query 79444 CCCTG-GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 || | ||| || || ||| || || | || |||||||||||| ||||| ||||| Sbjct 168161 GCCAGTGTTTTTGCGGAGAGCGACGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGATA 168220 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 ||| ||||| | ||| |||||| || || || | ||| || || || |||||||| Sbjct 168221 GATAGCGAATGCACCTGGACGCTTGTTTCCTCCTTGATCGACATAACGAGCAGTGTTGTT 168280 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGT 79622 | |||| |||||||| || | | || | || || || || ||| ||| || Sbjct 168281 GTAAACACGGAGCATTGGAATAAGTCCATTGGAAGTTCCATTGGTTCCGGCGATGACTGA 168340 Query 79623 ACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682 ||| | || ||||| || | | || || || || || | | ||| |||||| | Sbjct 168341 TCCGGTGGCACGAATCTTGTGGACATTGAGACCAATTCCTCCAGCACTCTTCGAGATGAG 168400 Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 || |||| || || || |||||||| || ||||| || || |||| | || || Sbjct 168401 TGCACACTGTTTCAGAGTGTCGTAGATTCCGAGAATCGAATCTTCGCTCATCGTGAGCAA 168460 Query 79743 GAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTG 79802 |||||| ||||||||||| ||| || | ||||||||| || || | || || Sbjct 168461 GAAGCACGATGACATCTGTGGACGACACGTTCCAGAGTTGAAGAGAGTTGGTGATGCATG 168520 Query 79803 CGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCC 79862 || | | || || ||||| || ||| || || || || | | ||| | || Sbjct 168521 TGTCATGTACCGTTCCGACATCAAATTGTATGTTTCGATGGCGGCAGCAATGTCATTTCC 168580 Query 79863 GTGGATGCCGACCGCGACGCGCATGAA 79889 ||| || |||| ||||| ||||| || Sbjct 168581 GTGAATTCCGATAGCGACACGCATCAA 168607 Score = 102 bits (112), Expect = 9e-17 Identities = 179/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 19424 CCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGC 19483 ||||||||||| || | ||||||||| || | || ||| | || || || ||| || Sbjct 168298 CCAATGCTCCGTGTTTACAACAACACTGCTCGTTATGTCGATCAAGGAGGAAACAAGCGT 168239 Query 19484 AAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAA 19543 || | ||||| ||||| || |||||||||||||| |||||| | || ||| ||| Sbjct 168238 CCAGGTGCATTCGCTATCTATCTTGAGCCATGGCACGCCGACGTCTTCGAGTTCGTCGCT 168179 Query 19544 CTGCGCCTGAAC-CAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTG 19602 || ||| ||| | || | || ||| |||| ||| ||| | ||| ||| | || Sbjct 168178 CTCCGCAAAAACACTGGCCCAGAAGAAGA-GCGCGCTCGTGACTTGTTCCTTGCCCTCTG 168120 Query 19603 GATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCC 19662 | |||| || || |||||| | || |||||||| |||| ||| |||||||||| Sbjct 168119 GGTTCCAGATCTCTTCATGAAACGTGTCGAGAAGGATCAAGATTGGTCGTTGATGTGCCC 168060 Query 19663 GCACGAATGCCCTGGCCT 19680 ||| ||||| || || Sbjct 168059 ATGCGAGTGCCCAGGACT 168042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCAT--AC 78247 || ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| | Sbjct 166612 GTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAG 166671 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 || | | ||| || || || ||||| |||||||| || || || || |||| Sbjct 166672 GTGATACC--GGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGATTGATCGA 166729 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 || | || || || || || ||||| ||||| | | ||| || | |||||||| | | Sbjct 166730 TGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCATACTG 166789 Query 78368 TCCGGTA 78374 | ||||| Sbjct 166790 TGCGGTA 166796 >seq7 Length=1891389 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 60216 GAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACG 60275 |||||| |||| || || |||||| | | | || || ||| || | | ||| || Sbjct 174120 GAGTTCCTCACCGAGGCACTTCCAGTCGACATGATCGGAATGAACTGTCGTCTCATGTCG 174061 Query 60276 CAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATT-TA 60334 ||||||||| |||| |||||||| | | | | ||| || | ||| | || | || | Sbjct 174060 CAGTACATTGAGTTCGTCGCGGATCACTTGCTCGCCGAGCTCGGATGCG-ACAAGTTGTT 174002 Query 60335 CGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTT 60394 | ||||| ||||| ||||||| ||||||| |||||| | || || ||||||||||| Sbjct 174001 CAAGGTGAAGAACCCATTCGACTTCATGGAGAACATCTCCATCGATGGAAAGACCAACTT 173942 Query 60395 CTTTGAGAAGCGGGTC 60410 ||| |||||||| ||| Sbjct 173941 CTTCGAGAAGCGCGTC 173926 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 |||||||| ||||| || ||| ||||| ||||||||| ||| |||||| | || Sbjct 174640 CGTCTCATCGCTTTCGCCGCCGTCGAAGGCATCTTCTTCAGTGGATCGTTCGCCTCGATC 174581 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTC 60100 |||||||| || ||||| || || ||||| || ||| | ||| ||||||||||| || Sbjct 174580 TTCTGGCTTAAGAAGCGCGGACTTATGCCAGGATTGACTCACTCAAACGAGCTGATCTC 174522 >seq202 Length=205773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675 || ||||||| | ||| | ||||||||||| || |||||||| | |||||| |||| Sbjct 120495 ACATCAAGGATTTCTACCGCACCGTATGGGAGATATCACAGAAGGAAACCATCGAGATGG 120554 Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735 | || ||||| || || | ||| || || || || ||||| || | ||||| || | Sbjct 120555 CCGCTGATCGTGGAGCATTCATTGATCAATCTCAATCGCTAAACATTCACATGGCAAAAC 120614 Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795 | ||| || | | | ||| ||| | | |||| ||| | ||||| | ||||| | Sbjct 120615 CCAGCTACGCCAGTGTCACCTCAATGTACTTTCACGGATGGAAAAAGGGAGTTAAGACTG 120674 Query 20796 GCATGTACTATCTGCG 20811 | ||||||||| |||| Sbjct 120675 GAATGTACTATTTGCG 120690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548502139069200