Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq17 170 2e-37 seq202 95.1 1e-14 seq7 84.2 2e-11 >seq17 Length=1338299 Score = 170 bits (188), Expect = 2e-37 Identities = 354/519 (68%), Gaps = 10/519 (2%) Strand=Plus/Minus Query 53269 GTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTC 53328 |||| | || || || | ||||| || |||||| |||| ||| || || |||||||| Sbjct 168530 GTACATGACACATGCATCACCAACTCTCTTCAACTCTGGAACGTGTCGTCCACAGATGTC 168471 Query 53329 GAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAA 53388 |||||| || | |||||| || || ||||| ||| |||||||| || || || Sbjct 168470 ATCGTGCTTCTTGCTCACGATGAGCGAAGATTCGATTCTCGGAATCTACGACACTCTGAA 168411 Query 53389 GGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCG 53448 ||||||| | |||||| ||| | | || || || ||| || | | || | || Sbjct 168410 ACAGTGTGCACTCATCTCGAAGAGTGCTGGAGGAATTGGTCTCAATGTCCACAAGATTCG 168351 Query 53449 TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCT 53508 ||| | ||| || ||| || || || || || ||||| | | || ||||| Sbjct 168350 TGCCACCGGATCAGTCATCGCCGGAACCAATGGAACTTCCAATGGACTTATTCCAATGCT 168291 Query 53509 CCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGT 53567 ||| || | ||||||||| || || || ||| | || || || ||||| | ||| | Sbjct 168290 CCGTGTTTACAACAACACTGCTCGTTATGTCGATCAAGGAGGAAACAAGCGTCCAGGTG- 168232 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | ||||| ||||| || ||||| |||||||||||| | | ||||| ||| || || | Sbjct 168231 CATTCGCTATCTATCTTGAGCCATGGCACGCCGACGTCTTCGAGTTCGTCGCTCTCCG-C 168173 Query 53628 TGAATCA--GG--GTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATT 53683 || || || || |||||| ||||| |||||| |||| || || ||| || Sbjct 168172 AAAAACACTGGCCCAGAAGAAGAG-CGCGCT--CGTGACTTGTTCCTTGCCCTCTGGGTT 168116 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || || ||||||||| || || |||||||| | || |||| |||||||||| | Sbjct 168115 CCAGATCTCTTCATGAAACGTGTCGAGAAGGATCAAGATTGGTCGTTGATGTGCCCATGC 168056 Query 53744 GAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 |||||||| || ||| | | | || || ||||||||| Sbjct 168055 GAGTGCCCAGGACTCGATGATTGCTGGGGAGAGGAGTTT 168017 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 ||||||| | ||||| || || |||||||| |||||||| | || || ||| || Sbjct 166807 TCAAGGAACTCTACCGCACAGTATGGGAGATCTCACAGAAGGAGATTATCGAGATGGCTG 166748 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 |||||||||| || | |||||| || || || || || ||||| ||||| || || Sbjct 166747 CTGATCGTGGAGCATTCATCGATCAATCTCAATCACTCAACATTCACATGGCCAAACCAA 166688 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 ||| | | ||| |||||||| ||||| |||||||||||||||||||| || | Sbjct 166687 GCTACGCCGGTATCACCTCAATGCACTTCTACGGATGGAAGAAGGGACTCAAGACTGGAA 166628 Query 55908 TGTACTATCTGCGGAC 55923 ||||||| |||| || Sbjct 166627 TGTACTACTTGCGTAC 166612 >seq202 Length=205773 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 ||||||| | ||||| || || |||||||| |||||||| || || ||| | Sbjct 120498 TCAAGGATTTCTACCGCACCGTATGGGAGATATCACAGAAGGAAACCATCGAGATGGCCG 120557 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 |||||||||| || | ||| || || || || || || ||||| ||||| || || Sbjct 120558 CTGATCGTGGAGCATTCATTGATCAATCTCAATCGCTAAACATTCACATGGCAAAACC-- 120615 Query 55848 CA-CT-GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 || || |||| | | ||| ||| ||||| |||| ||||| |||||| | ||||| || Sbjct 120616 CAGCTACGCCAGTGTCACCTCAATGTACTTTCACGGATGGAAAAAGGGAGTTAAGACTGG 120675 Query 55906 TATGTACTATCTGCG 55920 ||||||||| |||| Sbjct 120676 AATGTACTATTTGCG 120690 >seq7 Length=1891389 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 74471 GACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAA 74530 ||| ||||| || || ||||||||||| || || | |||||||||||||| ||||||| Sbjct 173926 GACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATGGAGATGTTCTCCATGAAGTCGAA 173985 Query 74531 AGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGGCGATCCGC 74587 |||||||| |||| | || | ||| || || | || || | | | ||||||| Sbjct 173986 TGGGTTCTT--CACCTTGAACA-ACTTGTCGCATCCGAGCTCGGCGAGCAAGTGATCCGC 174042 Query 74588 CACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAG 74647 || || | ||||||||||| ||| | | ||| ||||| | | | || || Sbjct 174043 GACGAACTCAATGTACTGCGACATGAGACGACAGTTCATTCCGATCATGTCGACTGGAAG 174102 Query 74648 TGCCTCGGTGATAAACTC 74665 ||||||||||| ||||| Sbjct 174103 TGCCTCGGTGAGGAACTC 174120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547193393139000