Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq11 113 4e-20 >seq11 Length=2072269 Score = 113 bits (124), Expect = 4e-20 Identities = 297/451 (66%), Gaps = 8/451 (2%) Strand=Plus/Minus Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACT 30071 |||| ||||| ||||| || || ||||||||||||||||| | ||| ||||||| Sbjct 204008 CCATATCCCCGCTTCTCTGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACT 203949 Query 30072 GACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGC 30131 ||||||| | ||| ||||| || | |||| | ||||| || || ||||| ||| Sbjct 203948 GACACATCGTGTGACACGGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCGG 203889 Query 30132 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT---GAGGTCCACGGCGTTTTGC- 30187 ||| |||||| |||| | || || | | | |||| || ||| || || Sbjct 203888 ACATGATGATTCGCCGGCTGTCGGGCTCCTCCTTGATTTGTCGGATCAC----TTCGGCG 203833 Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 |||||||| || ||| || | |||||| | ||| ||| | || |||||| Sbjct 203832 AGCTGATCGACACCCTGACCGGTGTAGTCAGTGTGACAATCCACGTATTTCGCGCCGAAA 203773 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 || |||||||| || ||||| || || || ||||| ||||| || | | ||| || Sbjct 203772 TGTCTCCACTGAAATCCGTAGACTGGCCCGAGGTCACCCTCCTCGCGAGTCGTGAATCCG 203713 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAG 30367 ||||| | ||| | ||||| ||||| || ||||| ||| | | Sbjct 203712 AGGTTGTCGAGGAAGGAGCGATCGCCGTTCTTCTCCCAAATTTTTACATTTTTCGCCGCC 203653 Query 30368 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTC 30427 | | ||| || ||||| || || |||||| |||||||| || | || ||||| Sbjct 203652 AACAGTTTTCCGTCGGTGGAGCCGGAGATGAACCAGAGCAGCTCTTCGAGCACTCCCTTC 203593 Query 30428 CAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 ||| |||| | ||| || ||||| || |||| Sbjct 203592 CAATAGACACGCTTTGTGGTGAGCAGTGGAA 203562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406294033944060