Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq19 107 1e-18 >seq19 Length=917137 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||| |||||| ||||||||| || || ||||| ||| Sbjct 765528 CCTCCACGAAGACGGAGCACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAA 765587 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || || | ||| || || || || || | ||| || || || || || Sbjct 765588 AGAGTTCTTCCATCCTCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGA 765647 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| ||| ||| | || ||| | ||| ||||| | || || Sbjct 765648 ATTCCCTCCTTGTCTTGGAT-TTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGAC 765706 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | || || || || |||||||| Sbjct 765707 TTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | |||||| || |||||| || |||||||| || || Sbjct 763824 CCTCCACGAAGACGGAGAACGAGATGGAGGGTCGACTCCTTCTGGATGTTATAGTCGGAC 763883 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || || || ||||| || || ||||||||||| || || || Sbjct 763884 AAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGG 763943 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| |||| || | || ||| | || ||||| | || || Sbjct 763944 ATTCCCTCCTTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGAC 764002 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || ||||| | || ||||| || |||||||| Sbjct 764003 TTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 764050 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||||||||||||| ||||||||||||||| || || || Sbjct 766037 CCTCCTCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAC 766096 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | || || | || || ||||| || || | | ||| || || || || Sbjct 766097 AATGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 766156 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCAC 34658 | ||||||||||||| ||||| ||| | | |||||||| ||| || || Sbjct 766157 ATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGCT-TCGAC 766215 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || ||||| | || || ||||| |||||||| Sbjct 766216 TTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | ||||| || || || |||||| || |||||||| || || Sbjct 764789 CCTCCTCTCAAGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAC 764848 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || || || ||||| || || ||||||||||| || || || Sbjct 764849 AAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGG 764908 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| |||| || | || ||| | || ||||| | || || Sbjct 764909 ATTCCCTCCTTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGAC 764967 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || ||||| | || ||||| || |||||||| Sbjct 764968 TTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 765015 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || ||||| ||||||||||||||| ||||| || Sbjct 766265 CCTCCTCTGAGACGAAGGACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGAC 766324 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || ||||| ||||| || || | | || ||||| || || Sbjct 766325 AAGGTGCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 766384 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| |||| || | |||||| | || ||||| ||| || Sbjct 766385 ATTCCTTCCTTGTCTTGGATC-TTGGCTTTAACATTCTCGATGGTGTCAGAAGCCTCGAC 766443 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || ||||| | || || ||||| |||||||| Sbjct 766444 TTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766491 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| |||||||| |||||| || ||||| || || ||||| |||| | || || Sbjct 764351 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCC 764410 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| || || || || || | ||| || || || || || | ||||||||||||| || Sbjct 764411 AATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGGATTCCCTCCTTGTCT-TG 764469 Query 34618 ATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | || | || ||| | ||| ||||| ||| ||||| | ||| || || || Sbjct 764470 AATCTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACTTCGAGGGTGATGGTCTT 764529 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || |||||||| Sbjct 764530 TCCAGTCAAGGTCTTGACGAAGATCTGCAT 764559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314716922790065