Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq441 127 2e-24 seq11 122 8e-23 seq354 109 5e-19 >seq441 Length=99109 Score = 127 bits (140), Expect = 2e-24 Identities = 301/450 (67%), Gaps = 10/450 (2%) Strand=Plus/Plus Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATT 6737 |||| ||||| || ||||| || || || || ||||| |||||| | || || || | Sbjct 96386 CCATATCTCCGCTTCTCTGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACT 96445 Query 6738 GGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGC 6797 | || | || || ||||| || | | ||||| || | |||| ||| ||||||||| Sbjct 96446 GACACATCGTATGACACGGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCGG 96505 Query 6798 ACATCACGAT---CCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG-ATCACGTACTGC 6853 |||| | ||| || ||||| ||| ||| | | | ||||| ||||| | | || Sbjct 96506 ACATGATGATTCGCCGGCTGTC----GGGCTCCTCCTTGATTTGTCGGATCACTT-CGGC 96560 Query 6854 -AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAA 6912 ||||| || | ||||| || | ||||| | | | || || | ||| || || Sbjct 96561 GAGCTGATCGACACCCTGACCGGTGTAGTCTGTGTGACAATCCACGTATTTCGCTCCGAA 96620 Query 6913 GTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCC 6972 ||||||||||| || |||||||| || || | ||| |||||||| |||| | ||| || Sbjct 96621 ATGTCTCCACTGAAATCCGTAGACTGGCCCGAGGTCACCCTCCTCGCGAGCCGTGAATCC 96680 Query 6973 CCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGA 7032 | ||||| || ||| ||| |||| ||||| || ||||| | || Sbjct 96681 GAGATTGTCGAGGAAGGAGCGATCGCCGTTCTTCTCCCAAATTTTCACATTTTTCGCCGC 96740 Query 7033 GAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTT 7092 | | ||| || |||| || | |||||| |||||||| |||| ||| ||||| Sbjct 96741 CAACAACTTTCCGTCGGTGGAGCCGGAGATGAACCAGAGCAGCTCTTCGAGCACTCCCTT 96800 Query 7093 CCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 ||| || ||||| || || || ||||| || Sbjct 96801 CCAATAGACACGCTTTGTGGTGAGCAGTGG 96830 Score = 127 bits (140), Expect = 2e-24 Identities = 301/450 (67%), Gaps = 10/450 (2%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || ||||| || || || ||||| || |||||||| ||| |||| |||||||| |||||| Sbjct 96830 CCACTGCTCACCACAAAGCGTGTCTATTGGAAGGGAGTGCTCGAAGAGCTGCTCTGGTTC 96771 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 | || |||| || ||| | | || | ||||| || ||||| Sbjct 96770 ATCTCCGGCTCCACCGACGGAAAGTTGTTGGCGGCGAAAAATGTGAAAATTTGGGAGAAG 96711 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 |||| ||| ||| || ||||| | || ||| | |||| |||||||| ||| | Sbjct 96710 AACGGCGATCGCTCCTTCCTCGACAATCTCGGATTCACGGCTCGCGAGGAGGGTGACCTC 96651 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 || || |||||||| || ||||||||||| || || ||| | || || | | | Sbjct 96650 GGGCCAGTCTACGGATTTCAGTGGAGACATTTCGGAGCGAAATACGTGGATTGTCACACA 96591 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGAT-CGACACCTTGAAGCGGA 34520 ||||| | || ||||| | || ||||| || | | ||||| ||||| | | | ||| Sbjct 96590 GACTACACCGGTCAGGGTGTCGATCAGCTCGCCG-AAGTGATCCGACAAATCAAGGAGGA 96532 Query 34521 ACCCTGATGACAGAAGG---ATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577 ||| ||||| || ||| | |||| ||||||||| ||| |||| | || || Sbjct 96531 GCCC----GACAGCCGGCGAATCATCATGTCCGCGTGGAATCCGTCGGATTTGGGTCAGA 96476 Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCT 34637 ||| | | || ||||| || || | || || || || || | |||||| ||||| || | Sbjct 96475 TGGTGTTGCCACCGTGTCATACGATGTGTCAGTTTTATGTGGAGAATGGAGAGCTCTCGT 96416 Query 34638 GCCAGCTCTATCAACGATCGGGAGACATGG 34667 | || || ||||| || ||||| |||| Sbjct 96415 GTCAACTTTATCAGAGAAGCGGAGATATGG 96386 >seq11 Length=2072269 Score = 122 bits (134), Expect = 8e-23 Identities = 291/435 (67%), Gaps = 10/435 (2%) Strand=Plus/Plus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| ||||| || || || ||||| || |||||||| ||| |||| |||||||| |||| Sbjct 203562 TTCCACTGCTCACCACAAAGCGTGTCTATTGGAAGGGAGTGCTCGAAGAGCTGCTCTGGT 203621 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 || | || |||| || || | | || | || || || ||||| Sbjct 203622 TCATCTCCGGCTCCACCGACGGAAAACTGTTGGCGGCGAAAAATGTAAAAATTTGGGAGA 203681 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACT 34400 |||| ||| ||| || ||||| | || ||| | |||| |||||||| ||| Sbjct 203682 AGAACGGCGATCGCTCCTTCCTCGACAACCTCGGATTCACGACTCGCGAGGAGGGTGACC 203741 Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460 | || || |||||||| || ||||||||||| || || ||| | || || | | Sbjct 203742 TCGGGCCAGTCTACGGATTTCAGTGGAGACATTTCGGCGCGAAATACGTGGATTGTCACA 203801 Query 34461 CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGAT-CGACACCTTGAAGCG 34518 | ||||| | || ||||| | || ||||| || | | ||||| ||||| | | | | Sbjct 203802 CTGACTACACCGGTCAGGGTGTCGATCAGCTCGCCG-AAGTGATCCGACAAATCAAGGAG 203860 Query 34519 GAACCCTGATGACAGAAGG---ATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575 || ||| ||||| || ||| | |||| ||||||||| ||| |||| | || Sbjct 203861 GAGCCC----GACAGCCGGCGAATCATCATGTCCGCGTGGAATCCGTCGGATTTGGGTCA 203916 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 ||||| | | || ||||| ||||| | || || || || || | |||||| ||||| || Sbjct 203917 GATGGTGTTGCCACCGTGTCACACGATGTGTCAGTTTTATGTGGAGAATGGAGAGCTCTC 203976 Query 34636 CTGCCAGCTCTATCA 34650 || || || ||||| Sbjct 203977 GTGTCAACTTTATCA 203991 Score = 122 bits (134), Expect = 8e-23 Identities = 291/435 (67%), Gaps = 10/435 (2%) Strand=Plus/Minus Query 6695 TGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCAC 6754 ||||| || || || || ||||| |||||| | || || || || || | ||||| ||| Sbjct 203991 TGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACTGACACATCGTGTGACAC 203932 Query 6755 GGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGAT---CCTT 6811 || || | | ||||| || | |||| ||| ||||||||| |||| | ||| || Sbjct 203931 GGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCGGACATGATGATTCGCCGG 203872 Query 6812 CTGTCATCAGGGTTCCGCTTCAAGGTGTCG-ATCACGTACTGC-AGCTGGTCCGCTCCCT 6869 ||||| ||| ||| | | | ||||| ||||| | | || ||||| || | |||| Sbjct 203871 CTGTC----GGGCTCCTCCTTGATTTGTCGGATCACTT-CGGCGAGCTGATCGACACCCT 203817 Query 6870 GTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACC 6929 | || | ||||| | | | || || | ||| || || ||||||||||| || | Sbjct 203816 GACCGGTGTAGTCAGTGTGACAATCCACGTATTTCGCGCCGAAATGTCTCCACTGAAATC 203757 Query 6930 CGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGT 6989 ||||||| || || | ||| |||||||| |||| | ||| || | ||||| || ||| Sbjct 203756 CGTAGACTGGCCCGAGGTCACCCTCCTCGCGAGTCGTGAATCCGAGGTTGTCGAGGAAGG 203697 Query 6990 CTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCG 7049 ||| |||| ||||| || || || | || | | || || | Sbjct 203696 AGCGATCGCCGTTCTTCTCCCAAATTTTTACATTTTTCGCCGCCAACAGTTTTCCGTCGG 203637 Query 7050 TGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCG 7109 ||| || | |||||| |||||||| |||| ||| |||||||| || ||||| || | Sbjct 203636 TGGAGCCGGAGATGAACCAGAGCAGCTCTTCGAGCACTCCCTTCCAATAGACACGCTTTG 203577 Query 7110 TCGTCAGCAGCGGAA 7124 | || ||||| |||| Sbjct 203576 TGGTGAGCAGTGGAA 203562 >seq354 Length=147946 Score = 109 bits (120), Expect = 5e-19 Identities = 297/450 (66%), Gaps = 10/450 (2%) Strand=Plus/Plus Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATT 6737 |||| ||||| || |||| || || || || ||||| |||||| | || || || | Sbjct 145636 CCATATCTCCGCTTCTCTGATGAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACT 145695 Query 6738 GGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGC 6797 | || | ||||| ||||| || | | ||||| || | |||| ||| || |||||| Sbjct 145696 GACACATCGTGTGACACGGTGGCAACACCATCCGACCCAAATCCAACGGATTTCACGCGG 145755 Query 6798 ACATCACGAT---CCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG-ATCACGTACTGC 6853 |||| | || || ||||| ||| ||| | | | ||||| ||||| | | || Sbjct 145756 ACATGATTATTCGCCGGCTGTC----GGGCTCCTCCTTGATTTGTCGGATCACTT-CGGC 145810 Query 6854 -AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAA 6912 ||||| || | ||||| || | ||||| | | | || || | ||| || || Sbjct 145811 GAGCTGATCGACACCCTGACCGGTGTAGTCTGTGTGACAATCCACGTATTTCGCGCCGAA 145870 Query 6913 GTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCC 6972 ||||||||||| || |||||||| || |||| ||| |||||||| |||| | ||| || Sbjct 145871 ATGTCTCCACTGAAATCCGTAGACTGGTCCCAGGTCACCCTCCTCGCGAGCCGTGAATCC 145930 Query 6973 CCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGA 7032 | ||||| | ||| ||| |||| ||||| || ||||| | || Sbjct 145931 GAGATTGTCGGGGAAGAAGCGATCGCCGTTCTTCTCCCAAATTTTCACATTTTTCGCCGC 145990 Query 7033 GAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTT 7092 | | ||| || |||| || | |||||| |||||||| |||| | | ||||| Sbjct 145991 CAACAACTTTCCGTCGGTGGAGCCGGAGATGAACCAGAGCAGCTCTTCGAGCGCTCCCTT 146050 Query 7093 CCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 || || ||||| || || || ||||| || Sbjct 146051 TCAATAGACACGCTTTGTGGTGAGCAGTGG 146080 Score = 109 bits (120), Expect = 5e-19 Identities = 297/450 (66%), Gaps = 10/450 (2%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || ||||| || || || ||||| || || ||||| | | |||| |||||||| |||||| Sbjct 146080 CCACTGCTCACCACAAAGCGTGTCTATTGAAAGGGAGCGCTCGAAGAGCTGCTCTGGTTC 146021 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 | || |||| || ||| | | || | ||||| || ||||| Sbjct 146020 ATCTCCGGCTCCACCGACGGAAAGTTGTTGGCGGCGAAAAATGTGAAAATTTGGGAGAAG 145961 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 |||| ||| ||| | ||||| | || ||| | |||| |||||||| ||| || Sbjct 145960 AACGGCGATCGCTTCTTCCCCGACAATCTCGGATTCACGGCTCGCGAGGAGGGTGACCTG 145901 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 || || |||||||| || ||||||||||| || || ||| | || || | | | Sbjct 145900 GGACCAGTCTACGGATTTCAGTGGAGACATTTCGGCGCGAAATACGTGGATTGTCACACA 145841 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGAT-CGACACCTTGAAGCGGA 34520 ||||| | || ||||| | || ||||| || | | ||||| ||||| | | | ||| Sbjct 145840 GACTACACCGGTCAGGGTGTCGATCAGCTCGCCG-AAGTGATCCGACAAATCAAGGAGGA 145782 Query 34521 ACCCTGATGACAGAAGG---ATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577 ||| ||||| || || | |||| |||||| || ||| |||| | || || Sbjct 145781 GCCC----GACAGCCGGCGAATAATCATGTCCGCGTGAAATCCGTTGGATTTGGGTCGGA 145726 Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCT 34637 ||| | | || ||||| ||||| | || || || || || | |||||| ||||| || | Sbjct 145725 TGGTGTTGCCACCGTGTCACACGATGTGTCAGTTTTATGTGGAGAATGGAGAGCTCTCGT 145666 Query 34638 GCCAGCTCTATCAACGATCGGGAGACATGG 34667 | || || |||| || ||||| |||| Sbjct 145665 GTCAACTTCATCAGAGAAGCGGAGATATGG 145636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448243881159600