Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq19 104 2e-17 >seq19 Length=917137 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| ||||| || ||||| | ||||| || || | Sbjct 765015 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764956 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || ||||||||| Sbjct 764955 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 764896 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || ||||| || || || || || | ||||| || ||| || ||| Sbjct 764895 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTATAAC 764836 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | || || ||| | | ||| ||||||| Sbjct 764835 ATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGCTTGAGAGGAGG 764789 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| ||||| || ||||| | ||||| || || | Sbjct 764050 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 763991 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || ||||||||| Sbjct 763990 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 763931 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || ||||| || || || || || | ||||| || ||| || ||| Sbjct 763930 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTATAAC 763871 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || ||||| || | ||| | ||| | | | || |||||| Sbjct 763870 ATCCAGAAGGAGTCGACCCTCCATCTCGTTCTCCGTCTTCGTGGAGGA 763823 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || ||||| ||||| || ||||| || ||||| || | | Sbjct 766492 AATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAGGCTTC 766433 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| ||||| | || | | ||||| ||||| | || ||||| | Sbjct 766432 TGACACCATCGAGAATGTTAAAGCCAAGA-TCCAAGACAAGGAAGGAATCCCACCAGACC 766374 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || || ||||| ||||| || || || | ||||| || |||||||| Sbjct 766373 AGCAAAGACTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGCACCTTGTCCGATTACA 766314 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| ||||| || Sbjct 766313 ACATTCAAAAGGAGTCGAC 766295 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || ||||| || ||||| ||||||||||| | | Sbjct 764559 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTTGAGGCTTCC 764500 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || ||| ||||| || || | || |||||||| Sbjct 764499 GACACCATTGAAAACGTGAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 764440 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || || ||| |||| || | | | ||| | || |||||| Sbjct 764439 CAACGTCTCATCTTCGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCGGACTACAAC 764380 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 764379 ATCCAGAAGGAGTCGAC 764363 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| | ||||| || || | Sbjct 764787 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764728 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || ||||| ||||| | || ||||| || Sbjct 764727 GACACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 764668 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || ||||| || ||| |||| || | |||||| | |||||||||| Sbjct 764667 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGCCGCACTCTCTCCGATTACAAC 764608 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || ||||| Sbjct 764607 ATCCAAAAGGAATCCAC 764591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337995985078940