Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 >seq11 Length=2072269 Score = 104 bits (114), Expect = 2e-17 Identities = 297/452 (66%), Gaps = 10/452 (2%) Strand=Plus/Minus Query 27278 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACT 27337 |||| ||||| ||||| || || ||||||||||||||||||| || ||||||| Sbjct 204008 CCATATCCCCGCTTCTCTGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACT 203949 Query 27338 GACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGC 27397 |||| || | ||| ||||| || | |||| | ||||| || || ||||| ||| Sbjct 203948 GACACATCGTGTGACACGGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCGG 203889 Query 27398 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT---GAGGTCCACGGCGTTTTGC- 27453 ||| |||||| |||| | || || | | | |||| || ||| || || Sbjct 203888 ACATGATGATTCGCCGGCTGTCGGGCTCCTCCTTGATTTGTCGGATCAC----TTCGGCG 203833 Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCA-TGTCCGTGTACTCTGCTCCGAA 27512 |||||||| || ||| || | |||||| | | | ||| ||| | || ||||| Sbjct 203832 AGCTGATCGACACCCTGACCGGTGTAGTC-AGTGTGACAATCCACGTATTTCGCGCCGAA 203774 Query 27513 ATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 27572 ||| ||||| || || ||||| || || || ||||| ||||| || | | ||| || Sbjct 203773 ATGTCTCCACTGAAATCCGTAGACTGGCCCGAGGTCACCCTCCTCGCGAGTCGTGAATCC 203714 Query 27573 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGA 27632 ||||| | ||| | ||||| ||||| || ||||| ||| | | Sbjct 203713 GAGGTTGTCGAGGAAGGAGCGATCGCCGTTCTTCTCCCAAATTTTTACATTTTTCGCCGC 203654 Query 27633 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 27692 | | ||| || ||||| || || |||||| |||||||| || | || |||| Sbjct 203653 CAACAGTTTTCCGTCGGTGGAGCCGGAGATGAACCAGAGCAGCTCTTCGAGCACTCCCTT 203594 Query 27693 CCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 |||| |||| | ||| || ||||| || |||| Sbjct 203593 CCAATAGACACGCTTTGTGGTGAGCAGTGGAA 203562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369492316365455