Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_030920.1 Length=165868 Score E Sequences producing significant alignments: (Bits) Value seq3152 91.5 2e-13 >seq3152 Length=4343 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 132782 CGGTTTATCAATAGGGGTTATCTTCCCGAAGACCTATTCCAAATTGGTTGTATAGGTTTG 132841 || ||||| || ||||| ||| ||| ||||| || ||||| ||||||||||| ||| || Sbjct 4303 CGTTTTATGAACAGGGGATATGATCCGGAAGATCTGTTCCAGATTGGTTGTATCGGTCTG 4244 Query 132842 CTGAAG--AGTATTGATAAATTCGACCTTGACTACGATGTTGCTTTTTCTACCTACGCTG 132899 || ||| |||| || ||||| || || || || || || || |||||||| | Sbjct 4243 CTCAAGTCAGTA--GACAAATTTGATCTCAGTTATGACGTGAAGTTCTCAACCTACGCGG 4186 Query 132900 TTCCTATGATTATTGGAGAGATTCAAAGGTTTATTAGGGATGATGGAACCGTAAAGGTAC 132959 | || ||||| || ||||| || || | || | | ||||| || ||| | ||||| Sbjct 4185 TACCGATGATCATCGGAGAAATCCAGCGATTCCTGCGAGATGACGGTACCCTGAAGGTCA 4126 Query 132960 CTCGAACAATTAAGGAGTTAGCAAATAA 132987 ||| || | || ||| | || ||||| Sbjct 4125 GTCGTTCACTGAAAGAGATGGCGAATAA 4098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530627677538400