Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq17 183 4e-41 seq202 118 1e-21 >seq17 Length=1338299 Score = 183 bits (202), Expect = 4e-41 Identities = 414/620 (67%), Gaps = 12/620 (2%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| || |||||||| |||||| | ||| ||||| || |||||||||||| ||| Sbjct 168015 TCAAACTCCTCTCCCCAGCAATCATCGAGTCCTGGGCACTCGCATGGGCACATCAACGAC 168074 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || || ||| | || || |||||||| |||||||| || | ||| || |||| || Sbjct 168075 CAATCTTGATCCTTCTCGACACGTTTCATGAAGAGATCTGGAACCCAGAGGGCAAGGAAC 168134 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | || || | | | |||||| || || || || ||| ||| ||||| | Sbjct 168135 AAGTCACGAGCGCGCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAACTCGAAG 168194 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 | || | |||||||| || ||||| || || | | || || || || || ||||| Sbjct 168195 ACGTCGGCGTGCCATGGCTCAAGATAGATAGCGAATGCACCTGGACGCTTGTTTCCTCCT 168254 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 ||||| | ||| | || ||||| || ||||| | | ||||||||||| || || || Sbjct 168255 TGATCGACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGGAATAAGTCCATTGGAA 168314 Query 78225 GTTCCATTTGTTCCAGAAATATAACT--TCCACTTGCGCGAATATTACTAATGGATAT-- 78280 |||||||| ||||| | || ||| ||| | || ||||| || |||| || Sbjct 168315 GTTCCATTGGTTCCGG--CGATGACTGATCCGGTGGCACGAAT----CTTGTGGACATTG 168368 Query 78281 --CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 || |||||||| || |||| || || || || || |||||| || |||||||| Sbjct 168369 AGACCAATTCCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCAGAGTGTCGTAGATT 168428 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 78398 || || || || |||| | || | || || ||||| || || || Sbjct 168429 CCGAGAATCGAATCTTCGCTCATCGTGAGCAAGAAGCACGATGACATCTGTGGACGACAC 168488 Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| | || || | || || |||||||| || | | ||| || | | |||| Sbjct 168489 GTTCCAGAGTTGAAGAGAGTTGGTGATGCATGTGTCATGTACCGTTCCGACATCAAATTG 168548 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||| || || | | ||||| | |||||||| | || |||||||||||| Sbjct 168549 TATGTTTCGATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATAGCGACACGCATCAAC 168608 Query 78519 ATATGCTGAGGTCTTTCAAC 78538 || |||||||| | ||||| Sbjct 168609 ATTTGCTGAGGACGCTCAAC 168628 Score = 167 bits (184), Expect = 3e-36 Identities = 299/436 (69%), Gaps = 3/436 (1%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || || ||||| | |||||||| ||||| || || ||| ||||||||||||| Sbjct 166603 GCTGGCTTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 166662 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| || | || || || || | ||| || ||||| || | || ||| | Sbjct 166663 TGCATTGAGGTGATACCGGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGAT 166722 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||||||||| ||||| | |||||| ||||| | ||||| ||| || | || ||| Sbjct 166723 TGATCGATGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCC 166782 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAA 77039 || | || | | | || ||||| |||||||| | || | ||||||||||| Sbjct 166783 CATACTGTGCGGTAGAGTTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGAT 166842 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 ||| | | || | | | ||||| || ||||| ||||||| ||||| ||| Sbjct 166843 CCATTGTTGGCAATGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAA 166902 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 | | || | || ||||| || || || || || || || | || | || | ||| Sbjct 166903 TCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAG 166962 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 ||||| || ||||| || | |||||| |||||||| | ||||||||| || |||||| Sbjct 166963 ATATTGGATGTGTATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCA 167022 Query 77220 GTTGGCATAGGTGCCA 77235 |||||||| ||||||| Sbjct 167023 GTTGGCATCGGTGCCA 167038 >seq202 Length=205773 Score = 118 bits (130), Expect = 1e-21 Identities = 288/436 (66%), Gaps = 3/436 (1%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 ||||| || | ||| | ||||||||| ||||| || | ||| ||||||||| || Sbjct 120702 GCGGGCTTAGAACGCAAATAGTACATTCCAGTCTTAACTCCCTTTTTCCATCCGTGAAAG 120643 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 | ||| || | ||| || || || | || || ||||| || | ||| ||| | Sbjct 120642 TACATTGAGGTGACACTGGCGTAGCTGGGTTTTGCCATGTGAATGTTTAGCGATTGAGAT 120583 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| ||||| ||||| | |||||| ||||| | || | ||| || | || ||| Sbjct 120582 TGATCAATGAATGCTCCACGATCAGCGGCCATCTCGATGGTTTCCTTCTGTGATATCTCC 120523 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAA 77039 || | || | | | | ||||| || || |||| || |||||||| || Sbjct 120522 CATACGGTGCGGTAGAAATCCTTGATGTCGTCAGGAATTCCTGCGAAGTTTTGAATAGAT 120463 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 || | | || | ||| ||||| || |||| ||||||| ||||| | ||| Sbjct 120462 CCGTTGTTAGCGATGAGTGTGTTCTTCATCTCATTGGACCACAATCCTCTCTCAATCAAA 120403 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 | | || | || ||||| || || || || || || || | || | |||| ||| Sbjct 120402 TCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCGCCGGAGAGCACGCGCCGAGAGTAG 120343 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 ||||| || ||||| || | ||| || ||||| || | ||||||||| || |||||| Sbjct 120342 ATATTCGATGTGTATGGCTCTATAGACTCGTTGTTACCAAGAATTTGAGCGGTGGAAGCA 120283 Query 77220 GTTGGCATAGGTGCCA 77235 |||||||| || |||| Sbjct 120282 GTTGGCATCGGCGCCA 120267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694640101495200