Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq17 192 8e-44 seq196 109 8e-19 seq154 86.0 9e-12 >seq17 Length=1338299 Score = 192 bits (212), Expect = 8e-44 Identities = 307/438 (70%), Gaps = 7/438 (2%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||| || ||||| | |||||||| ||||| || || ||| ||||||||||||| Sbjct 166603 GCTGGCTTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 166662 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 ||||| || | || || || || | ||| || ||||| || | || ||| | Sbjct 166663 TGCATTGAGGTGATACCGGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGAT 166722 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||||||||| ||||| | |||||| ||||| | ||||| ||| || | || ||| Sbjct 166723 TGATCGATGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCC 166782 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATT--TG---TATTTTGAATGG 75632 || | || | | | || ||||| |||||||| |||| || | |||||||||| Sbjct 166783 CATACTGTGCGGTAGAGTTCCTTGATGTCATCTGG--GATTCCTGGGATGTTTTGAATGG 166840 Query 75633 ATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692 |||| | | || | | | ||||| |||||||| ||||||| ||||||| | Sbjct 166841 ATCCATTGTTGGCAATGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCA 166900 Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752 || | | || | || ||||| ||||| || || || || || | || | ||| | || Sbjct 166901 AATCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGT 166960 Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812 | ||||| || ||||| || | |||||| |||||||| | ||||||||| || |||| Sbjct 166961 AGATATTGGATGTGTATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAG 167020 Query 75813 CAGTCGGCATAGGTGCCA 75830 |||| ||||| ||||||| Sbjct 167021 CAGTTGGCATCGGTGCCA 167038 Score = 183 bits (202), Expect = 4e-41 Identities = 412/617 (67%), Gaps = 4/617 (1%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| || |||||||| |||||| | || || || || || |||||||| ||| Sbjct 168015 TCAAACTCCTCTCCCCAGCAATCATCGAGTCCTGGGCACTCGCATGGGCACATCAACGAC 168074 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || || ||| | || || |||||||| |||||||| || | ||| || |||| || Sbjct 168075 CAATCTTGATCCTTCTCGACACGTTTCATGAAGAGATCTGGAACCCAGAGGGCAAGGAAC 168134 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 | || || | | |||||| || || || || ||| | | |||||| | Sbjct 168135 AAGTCACGAGCGCGCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAACTCGAAG 168194 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | || | |||||||| || ||||| || || | |||| || || || || ||||| Sbjct 168195 ACGTCGGCGTGCCATGGCTCAAGATAGATAGCGAATGCACCTGGACGCTTGTTTCCTCCT 168254 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 ||||| | ||| | |||||||| || ||||| | | ||||||||||| || || || Sbjct 168255 TGATCGACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGGAATAAGTCCATTGGAA 168314 Query 76820 GTACCATTTGTTCCAGAAATATAACT--TCCACATGCACGAATATTACTAATAGATAGGC 76877 || ||||| ||||| | || ||| ||| |||||||| || | | || | Sbjct 168315 GTTCCATTGGTTCCGG--CGATGACTGATCCGGTGGCACGAATCTTGTGGACATTGAGAC 168372 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | |||||||| || | || ||||| || ||||| |||||| ||||| ||||| || Sbjct 168373 CAATTCCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCAGAGTGTCGTAGATTCCGA 168432 Query 76938 CTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 76997 || ||| || |||| | || | || || ||||| || || || |||| Sbjct 168433 GAATCGAATCTTCGCTCATCGTGAGCAAGAAGCACGATGACATCTGTGGACGACACGTTC 168492 Query 76998 CTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATG 77057 | | || || | || || |||||||| || | | ||| || | | |||||||| Sbjct 168493 CAGAGTTGAAGAGAGTTGGTGATGCATGTGTCATGTACCGTTCCGACATCAAATTGTATG 168552 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 |||| || | || | || || | |||||||| | |||||||||||||||||| | Sbjct 168553 TTTCGATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATAGCGACACGCATCAACATTT 168612 Query 77118 GCTGAGGTCGTTCTACA 77134 ||||||| || || ||| Sbjct 168613 GCTGAGGACGCTCAACA 168629 >seq196 Length=138734 Score = 109 bits (120), Expect = 8e-19 Identities = 603/975 (62%), Gaps = 110/975 (11%) Strand=Plus/Minus Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 |||||| || ||| ||||| || ||||| || | || || |||| ||| |||||||| Sbjct 135315 TTGGTACTCGGATACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTC 135256 Query 46401 CATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAG 46460 |||||||||||| || || || | | ||| | |||| |||||| | |||| | || Sbjct 135255 CATAAAATCAAAAGGGTTGGTCTCGTCATACAATTTTGAAAATCCAAGTTCTACGAGTAG 135196 Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 46520 ||| ||||| | || || | ||||||| | | ||||| || || | || Sbjct 135195 GTGATCAGCAACATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTT 135136 Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC--CGATATTATC 46578 ||| || |||||||| || | ||| || || || | ||||| || ||||| | || Sbjct 135135 GACAGGAAGAGCCTCAGTCAAAAAATCCAACTCGATCGAAACAGCCTCATCGATAATGTC 135076 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTT--AAACATTAAACATGCAA 46636 | ||| || || | |||| || | ||| || ||||| | || |||| Sbjct 135075 AAAC--ACTCGTTTCTGAGATGGTTTATTAAC--AATCTTGGAAAACAAGAGGCACGCAA 135020 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAAT----------------------------- 46667 |||||| |||||| || |||||||| | || Sbjct 135019 AATCACGATGAAGACCCTCATCTCTGCAAAAAAGAAAAAATGTGAGAGGAGAGAAAAGGA 134960 Query 46668 ---------------TAA-TTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||| ||| ||||| ||||| || ||||| || || ||||||| Sbjct 134959 AAAGCTACCTTGCGATAAGTTCATTAGAGTGAGTGAGTCCGGGCATGAGACCGCGCTTTT 134900 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | |||||||| || | || || ||||| ||| || || ||||| ||||| || |||| Sbjct 134899 TCAGCCAAAAAATCGAGGCAAACGATCCGCTAAAAAAGATCCCTTCGACAGCAGCAAATG 134840 Query 46772 CGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTTTGAGCCCAATCAG 46828 |||| | | || | | | | || ||| |||||| | | | |||||||||| Sbjct 134839 CGACCAAACGTTCGGCAAAGTTCGTCTCCGTATCCGAAATCCATCGTAGGGCCCAATCAG 134780 Query 46829 CCTTTTTCTTTACACA-----AGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttC 46883 |||| ||||| | | | | ||||| ||||||| ||| | | | || Sbjct 134779 CCTTCTTCTTGATAAATTCAAACCCATTG-----ATAGCATCAAACAAGACGCGCCGCTC 134725 Query 46884 ATCACT-ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTT 46942 | || ||| || | ||| || || || || |||| |||| |||||||| || | Sbjct 134724 G-CTCTCATCCTTGATATAAGTCTCAATCAATTTGGCATACGTTTCAGAATGAATATTCT 134666 Query 46943 CAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAA 47002 ||| || || || || || ||||| ||| || || || | | ||||| ||| ||| Sbjct 134665 CAACTGCGATTTGGAAACCATAAAAGAATCGAGCCTCTGTTAGTTTGACCTCGGTAGAAA 134606 Query 47003 ATCGTTCAGACAA-----------ATTCTCATT----------CACT------------- 47028 |||||||| || | ||| ||| | |||| Sbjct 134605 ATCGTTCACACTAGAAAACACAACATTTTCAATAGGAAAAAATCACTCACCAAGTTTTCC 134546 Query 47029 ------ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTA-ATAAAATATTTTTC 47081 ||||||||| |||||||||||| ||||| ||| || | || ||| ||| || Sbjct 134545 ACAACGATTCCATCAGAAGCAGCAAAAAACGCCAAAACA-GTAGAGATGAAAGTTTTCTC 134487 Query 47082 ATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 47141 || | | ||| || ||||| || | ||||| ||| | ||| | ||| || | ||| Sbjct 134486 GTCAGCACTCAACTTGTTCCAATCGTCCATATCCTTTCCGAGATCAATTTCCTCTGTTGT 134427 Query 47142 CCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAA 47201 |||||| || || | || | || || |||||| ||||| |||| | |||||| | Sbjct 134426 CCAGAAAGAGGCAACAGCCATCTTGTAGTAATTCCAAATATCGCGATGCTTTATCGGATA 134367 Query 47202 AATAACAAATCTATT 47216 ||| || |||| ||| Sbjct 134366 AATCACGAATCGATT 134352 >seq154 Length=279404 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 |||||| || ||| ||||| || ||||| || | || || |||| ||| |||||||| Sbjct 593 TTGGTACTCGGATACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTC 652 Query 46401 CATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAG 46460 |||||||||||| || || || | | ||| | |||| |||||| | |||| | || Sbjct 653 CATAAAATCAAAAGGGTTGGTCTCGTCATACAATTTTGAAAATCCAAGTTCTACGAGTAG 712 Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 46520 ||| ||||| | || || | ||||||| | | ||||| || || | || Sbjct 713 GTGATCAGCAACATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTT 772 Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTC 46547 ||| || |||||||| || | ||| || Sbjct 773 GACAGGAAGAGCCTCAGTCAAAAAATC 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712904946897600