Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq1827 84.2 3e-11 >seq1827 Length=14047 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/92 (82%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 169931 ATTTCTTTTAGTTTTCTGCGGGTGTAGTTCAGTGGTAGAACGCTATCCTTCCAAGTTAGA 169990 |||| ||||| || ||||||||||||||| ||||||||| || ||||||||| || | Sbjct 6600 ATTTTTTTTA---TTATGCGGGTGTAGTTCAATGGTAGAACTTTAGCCTTCCAAGCTA-A 6545 Query 169991 TGTCGTCGGTTCGAATCCGATCTCCCGCTTCC 170022 | ||| ||||||| ||| ||| ||||||||| Sbjct 6544 TAGCGTGGGTTCGATTCCCATCACCCGCTTCC 6513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622044700716600