Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq19 170 4e-37 seq157 141 2e-28 seq156 141 2e-28 seq24 118 2e-21 >seq19 Length=917137 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| | |||||||| ||||| ||||| ||||||||||||| || || Sbjct 766271 CTGAGACGAAGGACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGACAAGGTG 766330 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || || ||| ||||||||||| || || |||||||| | | ||||||| Sbjct 766331 CGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCT 766390 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||| ||| |||| | | |||| ||| ||| |||||||| Sbjct 766391 TCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAAGCCTCGACTTCAAGT 766450 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || ||||||||||| || |||| ||||||| Sbjct 766451 GTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCATT 766492 Score = 147 bits (162), Expect = 5e-30 Identities = 168/224 (75%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | ||| ||||| ||||| ||||| |||||||| || | || || Sbjct 766043 CTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGACAATGTG 766102 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || | ||||| ||||||||||| || |||||||| || | | ||||| Sbjct 766103 CGTCCATCCTCCAACTGCTTT--CCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTC 766160 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| |||||||| || ||||||| | || | |||| ||| || ||||||| Sbjct 766161 CCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGCTTCGACTTCAA 766220 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||| || || ||||||||||| || |||| ||||||| Sbjct 766221 GTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCATT 766264 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| |||||||| || || || ||||||||||||||||||| | ||| | Sbjct 764569 GAGACGGAGGACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCG 764628 Query 151946 CCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || | ||||| ||||||||||| || || |||||||| | | ||||||| Sbjct 764629 GCCATCCTCCAATTGCTTT--CCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCT 764686 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| | || | | |||| || || ||||| | Sbjct 764687 TCCTTGTCTTGGATCTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAG 764746 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || | |||||| ||||||| |||||| Sbjct 764747 GTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 764787 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||||||||| || ||||||||||| || | | ||| | ||||| Sbjct 766508 AGAACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCATCC 766567 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| || | || ||||| | | ||||| ||||| | Sbjct 766568 TCGAGCTGCTTT--CCGGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTAT 766625 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| |||| | | |||| ||| ||| || || || || || | Sbjct 766626 CCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGAAGCCTCCACCTCCAGGGTGATGG 766685 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || | || || ||||||| ||||| Sbjct 766686 TTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 766719 Score = 113 bits (124), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| || || ||||| || |||||||| || |||| || || | ||||| Sbjct 763838 GAGAACGAGATGGAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCATC 763897 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||||||||| | | ||| || || | | |||||| ||||| Sbjct 763898 CTCGAGCTGCTTT--CCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTG 763955 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || ||||| |||| | | |||| || || ||||| | || || Sbjct 763956 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATG 764015 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||||||||||| |||||| Sbjct 764016 GTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 764050 Score = 113 bits (124), Expect = 1e-19 Identities = 153/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||| || |||||||| || |||| || || | ||||| || | Sbjct 764809 CAAG-TGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCATCCTCGA 764867 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| | | ||| || || | | |||||| ||||| ||||| Sbjct 764868 GCTGCTTT--CCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTG 764925 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||| |||| | | |||| || || ||||| | || || || || Sbjct 764926 GATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTT 764985 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||||||||| |||||| Sbjct 764986 TCCGGTGAGGGTCTTCACGAAGATCTGCAT 765015 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| ||||| || ||||||||||| || | | |||||| ||||| Sbjct 764348 AGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCC 764407 Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || |||||||| || | ||||| || | | |||||| ||||| | Sbjct 764408 TCCAATTGCTTT--CCAGCGAAGATGAGACGTTGCTGATCTGGTGGGATTCCCTCCTTGT 764465 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || || || | || | | |||| ||| ||| ||||| || || || | Sbjct 764466 CTTGAATCTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACTTCGAGGGTGATGG 764525 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | ||||| ||||||| |||||| Sbjct 764526 TCTTTCCAGTCAAGGTCTTGACGAAGATCTGCAT 764559 Score = 102 bits (112), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| ||||| || ||||| ||||| || |||| | || | ||||| Sbjct 765315 AGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCC 765374 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || |||||||| | || |||||||| | | |||||||||||| | Sbjct 765375 TCCAATTGCTTT--CCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTAT 765432 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || || || |||| | | | || || || || || ||||| |||| Sbjct 765433 CCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATAG 765492 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||| ||||| | |||||| Sbjct 765493 TCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 765526 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||| || | || |||||||| | | |||||||||||| || || || || Sbjct 765893 TTACCGGCGAAAATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTG 765952 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | | || ||| ||| ||||||||||| || || || || ||| Sbjct 765953 GCTTTGACGTTCTCAATGGTATCGGAAGCCTCGACTTCAAGAGTGATGGTCTTTCCGGTG 766012 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||||||||||| |||||| Sbjct 766013 AGGGTCTTCACGAAGATTTGCATT 766036 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| |||||||| || ||||| || | | ||||||||||| ||||| || || Sbjct 764189 TTACCGGCAAAGATAAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTA 764248 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | ||||||| ||| || || | ||| || || || || ||| Sbjct 764249 GCCTTGACATTCTCGATGGTGTCTGAGGCCTCAACCTCCAAAGTGATGGTCTTTCCGGTG 764308 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| ||||| Sbjct 764309 AGGGTCTTAACGAAGATTTGCAT 764331 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| |||||||| | || || || | | |||||||||||| |||||||| || Sbjct 765156 TTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTG 765215 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| || ||| ||||| | || || || || || || Sbjct 765216 GCCTTGACATTCTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTTTCCGGTC 765275 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | |||||| ||||||| |||||| Sbjct 765276 AAAGTCTTGACGAAGATCTGCAT 765298 >seq157 Length=243809 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || ||||| ||||| |||||||||||||| |||| | ||| | Sbjct 218205 GAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACG 218146 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||||||||| || || ||||| || | | |||||| Sbjct 218145 TCCATCCTCGAGTTGCTTT--CCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCT 218088 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || |||||| |||| | | | || || ||| ||||| || Sbjct 218087 TCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGG 218028 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| |||||||| ||||||| ||||| Sbjct 218027 GTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 217987 >seq156 Length=445966 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || ||||| ||||| |||||||||||||| |||| | ||| | Sbjct 424342 GAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACG 424401 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||||||||| || || ||||| || | | |||||| Sbjct 424402 TCCATCCTCGAGTTGCTTT--CCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCT 424459 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || |||||| |||| | | | || || ||| ||||| || Sbjct 424460 TCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGG 424519 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| |||||||| ||||||| ||||| Sbjct 424520 GTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 424560 >seq24 Length=791117 Score = 118 bits (130), Expect = 2e-21 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||||||||| || ||||| ||||| || |||| | || | ||||| Sbjct 463825 AGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCC 463884 Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| ||||||||||| || || |||||||| | | |||||||||||| | Sbjct 463885 TCCAATTGCTTT--CCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTAT 463942 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGA-ACTCTCTACTTCAAGAGTAATA 152069 | || || || || || |||| | | | || || ||| | ||||| ||||| ||| Sbjct 463943 CCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTC-CGACTTCGAGAGTGATA 464001 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||||||||| ||||| | |||||| Sbjct 464002 GTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 464036 Score = 114 bits (126), Expect = 3e-20 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| ||||| || ||||| ||||| || |||| | || | ||||| Sbjct 463196 AGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCC 463255 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| ||||||||||| || || |||||||| | | |||||||||||| | Sbjct 463256 TCCAATTGCTTT--CCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTAT 463313 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGA-ACTCTCTACTTCAAGAGTAATA 152069 | || || || || || |||| | | | || || ||| | ||||| ||||| ||| Sbjct 463314 CCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTC-CGACTTCGAGAGTGATA 463372 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||||||||| ||||| | |||||| Sbjct 463373 GTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 463407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153771941097655