Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1827 95.1 1e-14 >seq1827 Length=14047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 177/254 (70%), Gaps = 22/254 (9%) Strand=Plus/Minus Query 157416 TTTTGTCTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTT 157475 ||||| ||| |||||||| ||| ||||||| ||| ||| ||| ||| |||| |||| Sbjct 7031 TTTTGAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTT 6973 Query 157476 CGAATCCAGCCTGAGACGCCAGT--------CGGTA-TGGCGGAATTGGTAGACGCGCTG 157526 ||| || | ||| | ||| | |||| |||||||||||| |||||||| Sbjct 6972 CGAGCCCTTCATGACTCACCATTATATTTTGCGGTCGTGGCGGAATTGGCAGACGCGCAC 6913 Query 157527 GGTTTAGGTTCCAGTGTCCT--TGCGACGTGGAGGTTCAAGTCCTCT-TACCG-AC---- 157578 |||| |||| | ||| || | ||||||||||| |||||||| |||| || Sbjct 6912 GGTTCAGGTCCGTGTGGGCTAACCCCCCGTGGAGGTTCGAGTCCTCTCGACCGCACCATA 6853 Query 157579 ---ATTGCCCGAATAGCGCAGCGGTAGCGCACCTCCTTTACACGGAGATGGTCGGGGGTT 157635 |||| | | || ||||||||| ||| | |||| || || || ||||| ||||| Sbjct 6852 TGTTTTGCGGAAGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTT 6793 Query 157636 CGAATCCC-TCTTC 157648 ||| |||| ||||| Sbjct 6792 CGATTCCCGTCTTC 6779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596282565058800