Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2960 268 1e-66 >seq2960 Length=2674 Score = 268 bits (296), Expect = 1e-66 Identities = 213/255 (84%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 8358 CCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAA 8417 ||||||||||||||| ||| ||||||| |||||||||||||||| |||| |||||| Sbjct 34 CCAGGCTGGAGTGCAATGGTGTGATCTCAGCTCACTGCAACCTCCATTTCCCCGGTTCAT 93 Query 8418 GCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCA 8477 || |||||||||||||||||||| ||||||| ||||||||||| | |||| | | | Sbjct 94 GCAATTCTCCTGCCTCAGCCTCCTGAGTAGCCAGGATTACAGGCGCACACCACTATGTCC 153 Query 8478 AGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCG 8537 |||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||| Sbjct 154 AGCTAATTTTTGAATTTTTAGTAGAGACGGGGTTTCACCATATTGGTCAGGCTGGTCTCA 213 Query 8538 AACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCA 8597 |||||||||||| |||||||| | |||| |||||||||| | ||||||| ||||| Sbjct 214 AACTCCTGACCT--TGTGATCCGACCACCTCAGCCTCCCAAAATATTGGGATTGCAGGCG 271 Query 8598 TGAGCCACCGCGCCT 8612 |||| ||| | |||| Sbjct 272 TGAGGCACTGTGCCT 286 Score = 194 bits (214), Expect = 2e-44 Identities = 207/269 (77%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 8352 TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGG 8411 ||||||||||||| |||||||| || |||| ||||||||||||||| |||||| || Sbjct 2348 TGTTGCCCAGGCTAGAGTGCAGAGGTGCAATCTTGGCTCACTGCAACCTCTGCCTCCTGG 2407 Query 8412 GTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCA---AAAGCC 8468 |||||||| ||||| |||||||| |||| ||| |||| ||||| |||| ||| Sbjct 2408 GTTCAAGCAATTCTGCTGCCTCAATCTCCCAAGT-GCTGCAATTACCGGCATGTGCCGCC 2466 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528 ||||| || |||||||||||| |||| || | | |||||| ||||||||| ||| Sbjct 2467 ACCACACCTGTCTAATTTTTGTA-TTTTGCTACACACAGGGTTACACCATGTTAGCCGAA 2525 Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 8588 ||| | | ||||||||||||| | |||||| |||||||| | ||||| ||| | ||| | Sbjct 2526 CTGATTTTGAACTCCTGACCTGAGGTGATCTTCCTGCCTCAGTCTCCC-AAGAGATGGAA 2584 Query 8589 TTACAGGCATGAGCCACCGCGCCTGGCCC 8617 |||| | | ||||||| | ||||||| Sbjct 2585 TTACTTGTGTAAGCCACCACATCTGGCCC 2613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521466456027000