Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq19 149 5e-31 seq157 120 2e-22 seq156 120 2e-22 >seq19 Length=917137 Score = 149 bits (164), Expect = 5e-31 Identities = 176/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | | |||| |||||| || |||||| |||||||| || || Sbjct 764785 CATACCTCCTCTCAAGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTC 764844 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || || || | || || |||||||| ||||| |||||||||||||| ||||||| Sbjct 764845 GGACAAGGTGCGGC-CATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTG 764903 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | || ||||| || ||||| || | | |||| | |||||||||| || | Sbjct 764904 GTGGGATTCCCTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGGAGGCT 764962 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || |||||||| |||||||||||||||||||| ||||| Sbjct 764963 TCGACTTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 765015 Score = 138 bits (152), Expect = 8e-28 Identities = 150/194 (77%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||| |||||||| || |||| | || || || | || || |||||||| ||||| | Sbjct 763859 CTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGC-CATCCTCGAGCTGCTTTCCGGCGA 763917 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 ||||||||||||| ||||||| || | || ||||| || ||||| || | | | Sbjct 763918 AGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTT-GGCCTTGACG 763976 Query 44265 TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 ||| | |||||||||| || ||| || |||| || || |||||||| |||||||||||| Sbjct 763977 TTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTC 764036 Query 44324 ACGAAGATTTGCAT 44337 |||||||| ||||| Sbjct 764037 ACGAAGATCTGCAT 764050 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||||||||||||||||||| ||| ||| | || ||| Sbjct 764579 ACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCC 764638 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| ||||| ||||| | | ||||| |||| || | |||||||| || Sbjct 764639 AATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 764698 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | |||||||||| || ||| || |||| || || |||||| Sbjct 764699 ATCTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTT 764758 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||| ||||| Sbjct 764759 CCGGTCAAAGTCTTGACGAAGATCTGCAT 764787 Score = 120 bits (132), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185 ||||| ||||| ||| |||||||||||| |||||||| | ||||| | | || Sbjct 765545 CACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTT--CTTCCATCC 765602 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||||| || || ||||| | ||| |||||||||| || | || ||||| || Sbjct 765603 TCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCCTCCTTGTCT 765662 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || ||| | || | |||||||||| || ||| || |||| || || ||| Sbjct 765663 TGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTC 765722 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||||||||| |||||||| ||||| Sbjct 765723 TTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 Score = 113 bits (124), Expect = 3e-20 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | |||| |||||| || ||||||||| ||||||||||| Sbjct 766261 CATTCCTCCTCTGAGACGAAGGACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATC 766320 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || | ||| | || || ||||| || ||||| ||||| | | ||||| |||| Sbjct 766321 GGACAAGGT-GCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTG 766379 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | |||||||| || ||||| |||| || ||| | |||||||| | | Sbjct 766380 GTGGGATTCCTTCCTTGTCTTGGATCTT-GGCTTTAACATTCTCGATGGTGTCAGAAGCC 766438 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 766439 TCGACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766491 Score = 107 bits (118), Expect = 1e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | ||||| || || || ||||||||| |||||||| Sbjct 766030 TTGCATTCCTCCTCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTA 766089 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | | ||| | || |||| |||||| ||||| ||||| | | ||||||||| Sbjct 766090 GTCAGACAATGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATC 766149 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | || ||||| || ||||| || | || | || ||||||| | Sbjct 766150 TGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGC 766209 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 766210 TTCGACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || |||||| ||||||||||| || | || || | || || Sbjct 766511 ACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCATCCTCG 766570 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||| || || |||| || | || ||||| ||| Sbjct 766571 AGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTATCCTGG 766630 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| | |||||||||| || || || ||| Sbjct 766631 ATCTTGGCCTTGACATTCTCGATGGTGTCGGAAGCCTCCACCTCCAGGGTGATGGTTTTT 766690 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || || | || || ||||||||||||||||| Sbjct 766691 CCAGTCAACGTTTTGACGAAGATTTGCATGAT 766722 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCGT 44186 |||| ||| || || |||||| ||||||||||| || | ||||| | | || | Sbjct 764351 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTT--CTTCCATCCT 764408 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| ||||| || || ||||| | ||| |||||||||| || | || ||||| || Sbjct 764409 CCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGGATTCCCTCCTTGTCTT 764468 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| || | |||||||||| | || || || | || || |||| Sbjct 764469 GAATCTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACTTCGAGGGTGATGGTCT 764528 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | |||||| |||||||| ||||| Sbjct 764529 TTCCAGTCAAGGTCTTGACGAAGATCTGCAT 764559 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||||||||| | | |||||||||| || | |||||||| || ||||| Sbjct 764188 CTTACCGGCAAAGATAAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTT 764247 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| | | | |||||||| | || || ||||||| || || |||||||| || Sbjct 764248 AGCCTTGACATTCTCGATGGTGTCTGAGGCCTCAACCTCCAAAGTGATGGTCTTTCCGGT 764307 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| |||||||||||||| Sbjct 764308 GAGGGTCTTAACGAAGATTTGCAT 764331 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||| || ||||| | ||||| |||| || | |||||||| ||| ||||| Sbjct 765892 CTTACCGGCGAAAATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTT 765951 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 |||| | |||| | ||||| |||| | || || || | || || |||||||| | Sbjct 765952 G-GCTTTGACGTTCTCAATGGTATCGGAAGCCTCGACTTCAAGAGTGATGGTCTTTCCGG 766010 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||||||||||||||||| Sbjct 766011 TGAGGGTCTTCACGAAGATTTGCAT 766035 >seq157 Length=243809 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||||||||||||||| |||| ||| || | || || Sbjct 218195 ACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 218136 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| | |||||||||| || | |||||||| || Sbjct 218135 AGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 218076 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| || || || || | ||||| ||||| Sbjct 218075 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTA 218016 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 ||||| || ||||| |||||||||||||||| Sbjct 218015 CCCGTCAGAGTCTTGACGAAGATTTGCATGA 217985 >seq156 Length=445966 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||||||||||||||| |||| ||| || | || || Sbjct 424352 ACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 424411 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| | |||||||||| || | |||||||| || Sbjct 424412 AGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 424471 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| || || || || | ||||| ||||| Sbjct 424472 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTA 424531 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 ||||| || ||||| |||||||||||||||| Sbjct 424532 CCCGTCAGAGTCTTGACGAAGATTTGCATGA 424562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359975899699185