Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq19 176 1e-38 seq157 159 8e-34 seq156 159 8e-34 seq24 159 8e-34 >seq19 Length=917137 Score = 176 bits (194), Expect = 1e-38 Identities = 163/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || |||||||| |||||||| |||||||| || ||| Sbjct 766716 CAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCCGAC 766657 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| ||||| || || ||||| || || ||||| ||| Sbjct 766656 ACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCACCAGACCAACAA 766597 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| |||||||| |||||| ||||||| | || || ||| || Sbjct 766596 CGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGGACTCTGTCTGACTACAACATC 766537 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||| ||| Sbjct 766536 CAGAAGGAGTCTACTCTTCATCTCGTT 766510 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || |||||| | || || ||| ||| ||| Sbjct 764784 CAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCCGAC 764725 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||| ||||||||||| || ||||||||| Sbjct 764724 ACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 764665 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| || | || ||||| | ||||| ||||||| ||| || Sbjct 764664 AGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGCCGCACTCTCTCCGATTACAACATC 764605 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || || ||||| || Sbjct 764604 CAAAAGGAATCCACCCTTCATCTCGT 764579 Score = 163 bits (180), Expect = 7e-35 Identities = 162/206 (79%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| ||||| || ||||| || || || || || ||| Sbjct 766488 CAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAGGCTTCTGAC 766429 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||||| || ||||| ||||||||||| || ||||||||| Sbjct 766428 ACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 766369 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| ||||||||||||||||||||||| ||||| | || |||| ||||||| ||| | Sbjct 766368 AGACTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGCAC-CTTGTCCGATTACAACAT 766310 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 766309 TCAAAAGGAGTCGACTCTTCA-CTTG 766285 Score = 161 bits (178), Expect = 2e-34 Identities = 162/208 (78%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || |||||| | || || ||| ||| ||| Sbjct 764047 CAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCCGAC 763988 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| || |||||||| || || || || Sbjct 763987 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAACAG 763928 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||||||||| |||||||| ||||| | || |||| |||| |||||| | Sbjct 763927 CGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCAC-CTTGTCCGACTATAACAT 763869 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 ||| || || || || || ||||| ||| Sbjct 763868 CCAGAAGGAGTCGACCCTCCATCTCGTT 763841 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| ||||| || ||||| |||||||| ||| ||| || Sbjct 765523 CAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAGGTCGAAGCCTCTGAT 765464 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| ||||| || ||||||||||| || ||||||||| Sbjct 765463 ACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAGCAA 765404 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| || | || ||||| | || || |||| |||||| | Sbjct 765403 AGATTGATCTTCGCTGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAACATT 765344 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 765343 CAAAAGGAATCTACCCTTCA-CTTG 765320 Score = 154 bits (170), Expect = 4e-32 Identities = 162/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || |||||| | || || ||| ||| ||| Sbjct 765012 CAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCCGAC 764953 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| || |||||||| || || || || Sbjct 764952 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAACAG 764893 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||||||||| |||||||| ||||| | || |||| |||| |||||| | Sbjct 764892 CGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCAC-CTTGTCCGACTATAACAT 764834 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||| || || || || || || |||| || Sbjct 764833 CCAGAAGGAGTCTACCCTTCA-CTTGGTT 764806 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| || ||||||||||| || || || ||| Sbjct 764556 CAGATCTTCGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTTGAGGCTTCCGAC 764497 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || |||||||| ||||| || |||||||| || || |||||| Sbjct 764496 ACCATTGAAAACGTGAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAGCAA 764437 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| || | || |||||||| |||||| | || || ||| || Sbjct 764436 CGTCTCATCTTCGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCGGACTACAACATC 764377 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 764376 CAGAAGGAGTCGACTCTCCA-CTTG 764353 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| ||||| || ||||| || || || ||| || ||| Sbjct 766260 CAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAAGCTTCCGAC 766201 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| |||||||| ||||| || |||||||| || || ||||| Sbjct 766200 ACAATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAGCAG 766141 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| ||| | || |||||| | || | | || || ||| | Sbjct 766140 AGACTCATCTTCGCCGGAAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAACATT 766081 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || ||| | || | | |||||| Sbjct 766080 CAAAAGGAGTCGACTCTCCATTTGGTGCTCCGTCTCAGA 766042 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || ||||| | ||||| || ||||||| Sbjct 764328 CAAATCTTCGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTTGAGGCCTCAGAC 764269 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| |||||||| || || || |||||| Sbjct 764268 ACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAA 764209 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||||| ||||| || Sbjct 764208 AGACTTATCTTTGCCGGTAA 764189 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| ||||| || ||||| || || || || || || Sbjct 766032 CAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTTGAAGTCGAGGCTTCCGAT 765973 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||||||| ||||| |||||||| ||||||||||| || ||||||||| Sbjct 765972 ACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAGCAA 765913 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || |||||||| || Sbjct 765912 AGATTGATTTTCGCCGGTAA 765893 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || |||||| | || || || ||| ||| Sbjct 765295 CAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAGGCCTCCGAC 765236 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||||| ||||| ||||||||||| || || || ||| Sbjct 765235 ACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAACAA 765176 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || |||||||| ||||| || Sbjct 765175 CGTCTTATCTTTGCCGGTAA 765156 >seq157 Length=243809 Score = 159 bits (176), Expect = 8e-34 Identities = 161/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || || |||||||| || || ||| || Sbjct 217990 CAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCCGAT 218049 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| |||||||| || || || |||||| Sbjct 218050 ACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAA 218109 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| || ||||| |||||| | ||||| |||| || ||| || Sbjct 218110 AGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAACATC 218169 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || || || || || |||| || Sbjct 218170 CAAAAGGAGTCGACTCTCCA-CTTGGTT 218196 >seq156 Length=445966 Score = 159 bits (176), Expect = 8e-34 Identities = 161/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || || |||||||| || || ||| || Sbjct 424557 CAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCCGAT 424498 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| |||||||| || || || |||||| Sbjct 424497 ACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAA 424438 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| || ||||| |||||| | ||||| |||| || ||| || Sbjct 424437 AGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAACATC 424378 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || || || || || |||| || Sbjct 424377 CAAAAGGAGTCGACTCTCCA-CTTGGTT 424351 >seq24 Length=791117 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| ||||| || ||||| ||||| || | | ||| || Sbjct 463404 CAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCTGAT 463345 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| ||||| || ||||||||||| || ||||||||| Sbjct 463344 ACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAGCAA 463285 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| || | || ||||| | || || |||| |||||| | Sbjct 463284 AGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAACATT 463225 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 463224 CAAAAGGAATCTACCCTTCA-CTTG 463201 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| ||||| || ||||| ||||| || | | ||| || Sbjct 464033 CAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCTGAT 463974 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| ||||| || ||||||||||| || ||||||||| Sbjct 463973 ACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAGCAA 463914 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| || | || ||||| | || || |||| |||||| | Sbjct 463913 AGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAACATT 463854 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 463853 CAAAAGGAATCTACTCTTCA-CTTG 463830 Score = 105 bits (116), Expect = 2e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| ||||| || ||||| | ||||| || |||||||||||||||||| ||||| Sbjct 464415 TCACCGGAAAGACCATCACTTTGGAGGTTGAGGCCTCAGACACCATCGAGAATGTCAAGG 464356 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| || ||||| ||||||||||| || ||||||||| |||| |||| | |||| | Sbjct 464355 CTAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAAAGACTCATCTCCACCGGTA 464296 Query 178063 A 178063 | Sbjct 464295 A 464295 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || ||| || ||||| || ||||| | ||||| || ||||||||||||| Sbjct 463799 TTCGTCAAGACTTCGACCGGAAAGACCATCACTTTGGAGGTTGAGGCCTCAGACACCATC 463740 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 ||||| ||||| ||||| || ||||| ||||||||||| || || |||||| |||| Sbjct 463739 GAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAAAGACTC 463680 Query 178050 ATCTTCGCCGGAAA 178063 |||| | |||| || Sbjct 463679 ATCTCCACCGGTAA 463666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203680227626170