Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 178 2e-39 >seq5 Length=14578851 Score = 178 bits (196), Expect = 2e-39 Identities = 476/722 (66%), Gaps = 12/722 (2%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 || || || |||||||| || || | ||| || || || || |||||||||||| Sbjct 9911158 TCGAATTCCTCTCCCCAGCAATCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 9911099 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 || ||| || | | || || ||||| |||||||| || | ||| ||||| | || Sbjct 9911098 CAATCTTGATCTTTTTCGACGCGCTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAAC 9911039 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 | || | | | ||||||| | | || || |||||| |||| | | ||| | Sbjct 9911038 AAGTCACGAGCAC---GTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCG 9910982 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | ||||| | ||||| || |||||||| |||| | |||| || |||||||| ||| Sbjct 9910981 AAGATATCGGCGTGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGTTTGTTACCT 9910922 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || ||||| | ||| | ||||||||| || || || | | |||||| || | |||||| Sbjct 9910921 CCTTGATCAACGTAACGAGCGGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTG 9910862 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA--CTAATTGATA 54305 |||| |||||||| |||| || ||| | ||||| || || | ||||| Sbjct 9910861 GATGTTCCATTGGTTCCGGCAATCACTGAGCCAGTTGCACGGATCTTGTGCACATTGA-- 9910804 Query 54306 GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 54365 |||| || || || || | || || || | ||||| | || || || || ||||| | Sbjct 9910803 GACCGATGCCTCCAGCACTCTTCGAAATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTC 9910744 Query 54366 CCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 | || || || |||| || || |||| || |||||| || |||| | Sbjct 9910743 CGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAG-CATGAAGACATCTGTGGACGGCAC 9910685 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| | || || | || ||||| || || || | | ||| || | | ||| Sbjct 9910684 GTTCCAGAGTTGAAGAGAGTTGGAGAGGCATGTGTCATGTACCGTTCGGACATCAAGTTG 9910625 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 |||||||| || || | | || || | || ||||| | ||||||||||| | | Sbjct 9910624 TACGTCTCAATGGCGGCGGAAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAGC 9910565 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 || ||||| |||||||| |||| | ||||| || || || | |||||| || | Sbjct 9910564 ATTTGCTGTGGTCTTTCGACGACTTCCTTGTTGATCTTGAGAAGGTAGGAACGCTCGAGC 9910505 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGT 54664 || || || || || ||| |||| || | |||| ||||| | || | |||||||| Sbjct 9910504 GTCTTGAATCCGAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACGATGGCGGAGTTGAGC 9910445 Query 54665 TT 54666 || Sbjct 9910444 TT 9910443 Score = 134 bits (148), Expect = 2e-26 Identities = 292/432 (68%), Gaps = 5/432 (1%) Strand=Plus/Minus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||||| |||||||| ||||||||| || | ||||| | || ||||| || || ||| Sbjct 9911956 GATCCCTCATATGTAGAGTATGGTCCATCTCTTTCAGCCAACTCGCAACTAGCTTCCAAT 9911897 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAG-GCTATC 53499 ||| |||| || ||||| |||||||| |||| || |||||| || | | | | | Sbjct 9911896 GCAGCGTAGTAGATGGTCTCGAAGATTCTCTTGTTGAGATCTCTGGCCTGTGGAGATGTG 9911837 Query 53500 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 || ||||||| | | || || ||| || | ||||||||| || | |||||| || Sbjct 9911836 AA-TGGATAACGCATCAACATGAAGCAGTCAGCGAGTCCTTGAACTCCGAGACCGATTGG 9911778 Query 53560 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 53619 | ||| | | | || ||| | ||| ||| ||| |||||||| || | || || || Sbjct 9911777 ACGATGGCGCATGTTCGAGTTGCGAGCCTCTTCAATTGGATAATAGTTGACGTCAATGAT 9911718 Query 53620 TTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTG 53679 || || || || | || || ||| ||| || || |||| ||| || || | Sbjct 9911717 CTTGTTCAGATTCTTTGTTATGACCTTGGTCACCTCAGCGAGCTTGACAAAGTCGAACTT 9911658 Query 53680 TCCATC--TATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTC 53736 | || || | || || |||||| |||||||| || ||||| ||||| || ||||| Sbjct 9911657 TTTGTCGTTAGTCACGAAACGGTTCAAAGCAATAGAAGCGAGATTGCAAACAGCAACCTC 9911598 Query 53737 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 53796 | | | | | || | || ||||||||||| | || |||||||| ||||| || Sbjct 9911597 GTCTGGAGCAGAGTACTCGATAATCTCAGTGCACAAGTTGGAGCACTTGATAGTTCCCAA 9911538 Query 53797 ATTTTGTTGATT 53808 ||||| || || Sbjct 9911537 GTTTTGCTGGTT 9911526 Score = 125 bits (138), Expect = 8e-24 Identities = 311/469 (66%), Gaps = 5/469 (1%) Strand=Plus/Minus Query 52797 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856 |||| |||| || ||||||| || | || || || ||||| | |||||||||| Sbjct 9912590 CCTTATCCACGGTAAATTGAACGGCGTTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 9912531 Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916 | || || || || |||||||||| || ||||| ||| | || || || | Sbjct 9912530 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCGGCGTAGCTTG 9912471 Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976 | | || || || || || | || || |||||||||||| ||||| | || |||| Sbjct 9912470 GCTTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCACGATCGGCAG 9912411 Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 53035 |||| | || ||| ||| |||| || ||||| | || |||| ||| ||| ||| Sbjct 9912410 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGCTC-CTTGATA 9912352 Query 53036 TCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTG 53092 || ||||||| || | |||||||| |||||| | | || | | ||||| Sbjct 9912351 TCGTCTGGAATTCCTGGGATGTTCTGAATCGATCCATTGTTGGCAATGAGGCGGTTCTTC 9912292 Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 |||||||| |||| ||| ||||||| ||| | | || | || || || || | | Sbjct 9912291 ATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGACGATT 9912232 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 || || || || || | || | |||| ||| || || ||| || || || | || Sbjct 9912231 TGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAATCGAT 9912172 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261 || || ||||| | || ||||| || || ||||| ||||| || |||| Sbjct 9912171 TCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAGCCA 9912123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718876302160