Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq5 111 1e-19 >seq5 Length=14578851 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | |||||||| || | |||||||||||| || ||||| ||||||| Sbjct 4173737 TTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 4173678 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | ||||| ||||| || || || | || |||||||||||||| | Sbjct 4173677 AAAGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTG 4173618 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| ||| || ||| || | ||| ||||| | |||| Sbjct 4173617 GGATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCA 4173558 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || || || || || ||||||||||| || |||||||| Sbjct 4173557 CCTCCAAGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4173509 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||| || | ||| | || ||||||||||| ||||| ||||| | Sbjct 4175981 TCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGA 4175922 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || | ||||||| ||||| || || ||| | || | | ||||||||| || Sbjct 4175921 CAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGG 4175862 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG- 21126 | ||||||||||| |||||| || || | ||| || || | ||| || Sbjct 4175861 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTC-CGAAGCTTCGA 4175803 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || |||||||| ||||| || || ||||| || |||||||| Sbjct 4175802 CTTCCAAAGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 4175754 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | ||| |||| || | ||| || ||||| || ||||| ||||||| Sbjct 4173965 TTCCTCCTCTGAGGCGGAGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCG 4173906 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | ||||| ||||| || || || | || |||||||||||||| | Sbjct 4173905 AAAGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTG 4173846 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| ||| || ||| || | ||| ||||| | ||| Sbjct 4173845 GGATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCGA 4173786 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || ||||| || || || | || ||||| || ||||||||| Sbjct 4173785 CTTCCAAAGTGATGGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 4173736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | |||||||| || | |||||||||||| || ||||| ||||||| Sbjct 4175251 TTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 4175192 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| | | ||||| ||||| || || || | || | || ||||| || | Sbjct 4175191 AGAGGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGTG 4175132 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| || || | | | ||| || | ||| || Sbjct 4175131 GGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCAATAGTGTC-CGAAGCTTCG 4175073 Query 21127 -TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| ||||| | ||| ||||| || || ||||| Sbjct 4175072 ACCTCGAGGGTGATAGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4175023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257311313772