Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 201 1e-46 >seq5 Length=14578851 Score = 201 bits (222), Expect = 1e-46 Identities = 405/610 (66%), Gaps = 58/610 (10%) Strand=Plus/Minus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 || |||||||| ||||| | | | ||| || || |||| | ||||| ||||||| Sbjct 11386596 CGTTTCGTGATCTTCCCGCTGCGACACCATGAGATTTGGCAGTTCTACAAGAAGGCCGTC 11386537 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC 116722 || ||||| ||||| |||||||||||||| || ||| || | || ||| |||||| Sbjct 11386536 GCCTCGTTTTGGACTGTCGAGGAGGTGGATTTGGGCAAAGATATGAACGATTGGGAGAAG 11386477 Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 |||| | | | |||| | |||||| | |||||| ||||| ||||||||| ||| Sbjct 11386476 ATGAATGGCGATGAGCAGTACTTCATCTCCCGCGTGCTCGCCTTCTTCGCCGCCTCCGAT 11386417 Query 116783 GGCATCGTCAACGAGAATCTGGT------------------------------------- 116805 || || || || ||||| |||| Sbjct 11386416 GGTATTGTTAATGAGAACTTGGTAAGCTGAAATGCCCTTTAAGCCCTAAATGAAGCTTCT 11386357 Query 116806 ---------CGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGG 116856 ||| || ||| | | || || | || |||||||||| | ||||||||| Sbjct 11386356 TTTCTAGTGCGAACGCTTCTCGAACGAAGTCAAAGTCTCCGAGGCGCGCTTCTTCTACGG 11386297 Query 116857 CTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 || || |||||||| ||||| | |||||||| ||||| || | |||||||| || || Sbjct 11386296 ATTCCAAATCGCCATCGAGAATATTCACTCGGAGATGTACTCAAAGCTCATCGAGACCTA 11386237 Query 116917 CGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATC---GAGA-CGATGCCGT 116972 | | ||| | | ||||| | |||| ||||||||| ||| ||| || Sbjct 11386236 CATCCGCGATGAGAAGGAGCGCATGAAGCTGTTCAACGCCATCTTCGAGTTCGA----GT 11386181 Query 116973 GCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCG 117032 | |||| |||||||||| |||||||| || ||||| ||| || ||||| | |||| Sbjct 11386180 TCATCAAGAAGAAGGCCGACTGGGCGCTTCGTTGGATTTCCGACACCAAGGCCTCGTTCG 11386121 Query 117033 GCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCG 117092 ||| || ||| | || ||||| |||||||||||| |||||||| || ||||| Sbjct 11386120 CCGAACGGCTGATCGCATTCGCCGCCGTCGAGGGCATCTTCTTTAGCGGATCGTTCGCAT 11386061 Query 117093 CCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG--ACTTTCAGCAACGAGCT 117150 | || || ||||||||||| ||||| || ||||| || || || ||| ||||||||| Sbjct 11386060 CGATTTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTTTGACACATTC--CAACGAGCT 11386003 Query 117151 CATCTCCAGG 117160 ||||| ||| Sbjct 11386002 GATCTCGAGG 11385993 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || |||||| |||| |||||||| | Sbjct 4175023 ATGCAGATCTTCGTCAAGACGCTTACCGGAAAGACTATCACCCTCGAGGTCGAAGCTTCG 4175082 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || || | ||||| || || ||||| | || ||| Sbjct 4175083 GACACTATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 4175142 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| ||| || || ||||| || || | || |||||| ||||||||| Sbjct 4175143 CAACGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAAC 4175202 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 4175203 ATCCAGAAGGAGTCCACTCTCCA 4175225 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| |||||| | || || ||||| |||||| | || || || || || Sbjct 4173509 ATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCTTGGAGGTGGAGGCTTCC 4173568 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| | ||||| | ||||| ||||| ||||| | |||||| Sbjct 4173569 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 4173628 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||||||| ||| || || ||||| || || | | || || ||||||||| Sbjct 4173629 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAAC 4173688 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 4173689 ATCCAGAAGGAGTCCACTCTCCA 4173711 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| || ||||||||||| | || ||||| || | Sbjct 4173736 AATGCAAATCTTCGTCAAGACACTCACTGGAAAAACCATCACTTTGGAAGTCGAGGCTTC 4173795 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | |||| | ||||| | ||||| ||||| ||||| | ||||| Sbjct 4173796 CGATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCA 4173855 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||||| ||| || || ||||| || || | | || || |||||||| Sbjct 4173856 GCAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAA 4173915 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 4173916 CATCCAGAAGGA 4173927 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||| || || || || |||| ||||| ||| || Sbjct 1551823 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTCCCCTCGAAGTCGAGGCCTCC 1551764 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| || || || || | |||||| Sbjct 1551763 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 1551704 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| || || || || || || | || || ||| |||||||||| Sbjct 1551703 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 1551644 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 1551643 ATCCAGAAGGAGTCCACTCTCCA 1551621 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || || || || |||||| |||| |||||||| | Sbjct 4174794 AATGCAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTC 4174853 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||| | || |||| ||||| ||||| || || | ||||| Sbjct 4174854 GGACACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCA 4174913 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||||| ||| || || || || || || | || || || ||| ||||| Sbjct 4174914 GCAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAA 4174973 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| | || || ||||| || Sbjct 4174974 CATCCAAAAGGAGTCTACTCTCCATCTCGT 4175003 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || |||||||| |||| |||||||| | Sbjct 4175250 AATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAAGTCGAAGCTTC 4175309 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| || || | || || || || ||||| | |||| Sbjct 4175310 TGACACCATCGAAAACGTT-AAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACC 4175368 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || ||||||||| ||| || || || |||| || | | ||||| || |||| Sbjct 4175369 AACAGAGACTCATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACCCTGTCGGATTACA 4175428 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||| |||||| | || || ||||| || Sbjct 4175429 ACATCCAAAAGGAGTCAACACTCCATCTTGT 4175459 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || |||||||| | || |||||||| | Sbjct 4175754 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4175813 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || || | ||||| || || ||||| | |||||| Sbjct 4175814 GACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAG 4175873 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || || ||||| || |||| ||||| | |||||||||| Sbjct 4175874 CAGCGCTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGACGCACTTTGTCCGACTACAAC 4175933 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| | || || ||||| || Sbjct 4175934 ATCCAAAAGGAGTCGACCCTTCATCTCGT 4175962 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 117239 GAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTG 117298 |||||| ||| ||||| |||||||| |||||| |||||||||||||| || || || Sbjct 11384209 GAGATCATCAGAGACGCTGTCGCCATTGAGCAGGAGTTCCTCACCGAAGCCCTCCCCGTT 11384150 Query 117299 CGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGG 117358 || | ||| | || ||| | |||||| || |||||||||||||||||||| Sbjct 11384149 GACATGATCGGAATGAACTGCCGACTGATGTCCCAGTACATCGAGTTCGTCGCCGATCAT 11384090 Query 117359 CTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAAC 117394 ||||| | ||||| | ||| |||| |||||| Sbjct 11384089 CTGCTCCAGGAGCTCGGATGCGATAAGCTGTACAAC 11384054 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || ||||||||||| |||| ||||||||| | Sbjct 4173964 AATGCAGATCTTCGTCAAGACACTCACTGGAAAAACCATCACACTCGAAGTCGAAGCCTC 4174023 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | |||||| ||||| | ||||| || || || || | || || Sbjct 4174024 CGACACCATTGAGAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATTCCACCAGATCA 4174083 Query 40809 GCAACGACTCATCT 40822 |||| || | |||| Sbjct 4174084 GCAAAGATTGATCT 4174097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216836431920