Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5 140 3e-28 >seq5 Length=14578851 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| ||||| |||||||||||| | ||| || ||||||||| || Sbjct 4174997 TGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGC 4174938 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| ||| ||||||| | |||||| || || || || |||||||||||| ||| || Sbjct 4174937 TTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTG 4174878 Query 118656 TGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | |||| |||||||| ||| ||||| |||| ||| | ||| || ||||| Sbjct 4174877 GCTTTGACATTCTCGATGGTGTCCGAAGCT-TCGACTTCGAGGGTGATCGTCTTTCCGGT 4174819 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 4174818 CAATGTCTTGACGAAGATCTGCAT 4174795 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| || | ||| | |||||| Sbjct 4173718 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTC 4173659 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||| ||| ||||||| | |||||| || || || || |||||||||||| Sbjct 4173658 AAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 4173599 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | |||| ||| || | ||| ||||| | ||| | ||||| Sbjct 4173598 GATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAAGGTGATAGTTTT 4173539 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| ||||| || || || |||||| Sbjct 4173538 TCCTGTCAACGTTTTGACGAAGATTTGCATG 4173508 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| || | || || |||||| Sbjct 4175232 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCCTC 4175173 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||||||| |||| | || |||||||| || || || || ||||||||| Sbjct 4175172 AAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTG 4175113 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | ||||||| ||| |||||||||| ||| | || | Sbjct 4175112 GATCTTAGCCTTGACATTCTCAATAGTGTCCGAAGCT-TCGACCTCGAGGGTGATAGTCT 4175054 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || || || || |||||||| Sbjct 4175053 TTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4175023 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| ||||| |||||||| ||| || |||||| ||||||||||| |||||| Sbjct 4175950 GTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCA 4175891 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | |||||||| || || || || || |||||||| || || || Sbjct 4175890 GCAAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 4175831 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | |||| ||||||| ||| ||||| || | || | || || ||||||| ||| Sbjct 4175830 ACATTCTCGATTGTGTCCGAAGCT-TCGACTTCCAAAGTGATGGTCTTTCCGGTCAAAGT 4175772 Query 118721 TTTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 4175771 CTTGACGAAGATTTGCAT 4175754 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || || || |||||||| || | ||| | |||||| Sbjct 4173945 ACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCA 4173886 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| ||||||| | |||||| || || || || |||||||||||| Sbjct 4173885 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 4173826 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | |||| ||| || | |||||| || | || | ||||| Sbjct 4173825 ATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCGACTTCCAAAGTGATGGTTTTT 4173766 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || || ||||| Sbjct 4173765 CCAGTGAGTGTCTTGACGAAGATTTGCAT 4173737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| ||||| ||||| ||||||||||| || || | ||| || | Sbjct 4175458 CAAGATGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGACAGGGTTCTACCATCTTCCA 4175399 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 || ||||| ||| ||||||| | ||| || || || || || || ||||| || | Sbjct 4175398 ATTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGA 4175339 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || ||||| | ||||| |||||| | ||| ||||| |||| || | || || Sbjct 4175338 TCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCT-TCGACTTCGAGAGTGATGGTCTTT 4175280 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || || || |||||||| Sbjct 4175279 CCAGTCAGAGTCTTGACGAAGATCTGCAT 4175251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828459557964