Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 3e-14 >seq5 Length=14578851 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||| ||||| ||||||||||| || || | | || Sbjct 4173948 AGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCC 4173889 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| | ||||||||| || | | ||||||||| Sbjct 4173888 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 4173829 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | || | || | ||||| | ||||| |||| |||||||| Sbjct 4173828 TGGAT-TTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCGACTTCCAAAGTGATGGT 4173770 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || ||||| || || || ||||| ||||| Sbjct 4173769 TTTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 4173737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070554959520