Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 228 7e-55 >seq5 Length=14578851 Score = 228 bits (252), Expect = 7e-55 Identities = 423/613 (69%), Gaps = 11/613 (2%) Strand=Plus/Minus Query 23331 TTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTT 23390 |||| || ||||| ||||| |||| || ||||| || | ||| ||||| |||||| | Sbjct 9911093 TTGA-TCTTTTTCGACGCGCTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAACAAGT 9911035 Query 23391 CGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGT 23450 | || || || |||| ||| |||||||||||| | | | | ||| || || | | Sbjct 9911034 CACGAGCACGTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAGATAT 9910975 Query 23451 CCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGAT 23510 | || ||||| ||||| | ||| | ||| || || || |||| || || || || |||| Sbjct 9910974 CGGCGTGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGTTTGTTACCTCCTTGAT 9910915 Query 23511 CGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGC 23570 | |||||||| || ||||||||||| || | ||||| || | ||| || ||||| | | Sbjct 9910914 CAACGTAACGAGCGGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGATGTTC 9910855 Query 23571 CGCCTACGCCCGCCA-CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATG 23629 | || || | |||| || || |||| || | ||||| || | || ||| ||| Sbjct 9910854 CATTGGTTCCGGCAATCACT-GAGCCAGTTGCACGGATCTTGTGCACATTGAGACCGATG 9910796 Query 23630 CCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG 23689 ||||| | ||||| |||| ||||| || |||| |||||||||||| || || Sbjct 9910795 CCTCCAGCACTCTTCGAAATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCGAGAATC 9910736 Query 23690 CTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCC 23749 |||||| | ||| | |||||| || |||||||| || | | ||| | | Sbjct 9910735 GAGTCCTCGCTCATCGTCAACAAGAAGCATGAAGACATCTGTGGACGGCACGTTCCAGAG 9910676 Query 23750 GAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTC-GACATTAGATTGTACGTGTC 23808 ||| || || || ||| || || | ||| || ||| ||||| | |||||||| || Sbjct 9910675 TTGAAGAGAGTTGGAGAGGCATGTGTCATGTA-CCGTTCGGACATCAAGTTGTACGTCTC 9910617 Query 23809 GATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTG 23868 |||||||| |||||| | |||||| || || |||||||| ||||||| ||| | || Sbjct 9910616 AATGGCGGCGGAAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAGCATTTGCTG 9910557 Query 23869 AGGTCTCTCGACCGTGACGCC---GTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925 ||||| ||||| ||| | ||| || |||| || || ||||| | | ||| || Sbjct 9910556 TGGTCTTTCGAC---GACTTCCTTGTTGATCTTGAGAAGGTAGGAACGCTCGAGCGTCTT 9910500 Query 23926 AAATCCAAAATAG 23938 ||||| || ||| Sbjct 9910499 GAATCCGAAGTAG 9910487 Score = 156 bits (172), Expect = 4e-33 Identities = 320/473 (68%), Gaps = 2/473 (0%) Strand=Plus/Minus Query 22100 GCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATAC 22159 |||| ||| ||||| ||||| || | |||||| | || || ||||| || | || ||| Sbjct 9912594 GCGGCCTTATCCACGGTAAATTGAACGGCGTTGACAGCTGGCTTGGTACGCAAGTAGTAC 9912535 Query 22160 ATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAA 22219 || || ||||| || ||| ||||||| |||| || || || || || | | || Sbjct 9912534 ATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCGGCGTAG 9912475 Query 22220 CTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCG 22279 || ||| | |||||| | |||| ||||| |||||||| || ||||| |||||| Sbjct 9912474 CTTGGCTTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCACGATCG 9912415 Query 22280 GCGGCCATATTTATCAATGTACGCATC-GACATTTCCCATACGGTCTTGTACAGTTGCCT 22338 || ||||| | || ||| | | | || || ||||| ||||| ||| || | | | Sbjct 9912414 GCAGCCATCTCGAT-AATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGCTCCTT 9912356 Query 22339 GATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATT 22398 ||| || || || | ||| |||| | || || || ||| |||| || Sbjct 9912355 GATATCGTCTGGAATTCCTGGGATGTTCTGAATCGATCCATTGTTGGCAATGAGGCGGTT 9912296 Query 22399 TTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458 || ||| |||| ||||||| || | || |||||| || | || || |||| || Sbjct 9912295 CTTCATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGAC 9912236 Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 | ||| || || ||||| | || || || ||| ||||| || ||| | || || | Sbjct 9912235 GATTTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAAT 9912176 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 ||||| |||||||| || ||||||||||| ||||| || ||||| || |||| Sbjct 9912175 CGATTCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAGCCA 9912123 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| || || || ||||| | || || ||| | || Sbjct 4175754 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4175813 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||||||| | || || |||||| Sbjct 4175814 GACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAG 4175873 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| || ||| | || ||| ||| || ||| || ||| Sbjct 4175874 CAGCGCTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGACGCACTTTGTCCGACTACAAC 4175933 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || ||||| |||||||| || || Sbjct 4175934 ATCCAAAAGGAGTCGACCCTTCATCTCGTTCT 4175965 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || || ||||| |||| || ||| | || Sbjct 4175251 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAAGTCGAAGCTTCT 4175310 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || ||| |||||||| | || || ||||| Sbjct 4175311 GACACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAA 4175370 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || || |||||||| || || || ||||| ||| Sbjct 4175371 CAGAGACTCATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACCCTGTCGGATTACAAC 4175430 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || || ||||| || ||| | || | || |||| Sbjct 4175431 ATCCAAAAGGAGTCAACACTCCATCTTGTCCTTCGTCTCCGTGGAGGTA 4175479 Score = 100 bits (110), Expect = 3e-16 Identities = 239/356 (67%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 |||| | || || | ||||| |||| | |||||| | | ||| |||||||| ||| | Sbjct 11386347 CGAACGCTTCTCGAACGAAGTCAAAGTCTCCGAGGCGCGCTTCTTCTACGGATTCCAAAT 11386288 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 ||||| || || | || || || ||||| || |||||||| || ||| | || Sbjct 11386287 CGCCATCGAGAATATTCACTCGGAGATGTACTCAAAGCTCATCGAGACCTACATCCGCGA 11386228 Query 57860 CAACGACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGA 57918 | | ||| | | || ||||||||||| ||| | | | || | || ||||| Sbjct 11386227 TGAGAAGGAGCGCATGAAG-CTGTTCAACGCCATCTT--CGA-GTTCGAGTTCATCAAGA 11386172 Query 57919 AG---GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGC 57975 || || || ||| | | ||||| | ||| |||| |||||||||| ||| Sbjct 11386171 AGAAGGCCGACTGGGCGCTTCGTTGGATTTCCGACACCAAGGCCTCGTTCGCCGAACGGC 11386112 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035 | ||||| |||||||||||||| || || |||||| || || || | || || | Sbjct 11386111 TGATCGCATTCGCCGCCGTCGAGGGCATCTTCTTTAGCGGATCGTTCGCATCGATTTTCT 11386052 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 || | ||||| ||||| |||||||| || |||| | ||||||| |||| ||| Sbjct 11386051 GGCTCAAGAAGCGCGGTCTGATGCCAGGTTTGACACATTCCAACGAGCTGATCTCG 11385996 Score = 98.7 bits (108), Expect = 9e-16 Identities = 175/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 58161 GATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAA 58220 || |||||||| || || |||| || || ||||| || || | ||||| |||||||| Sbjct 11384221 GAGCGCATCTTCGAGATCATCAGAGACGCTGTCGCCATTGAGCAGGAGTTCCTCACCGAA 11384162 Query 58221 GCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTT 58280 ||||| || || | |||| |||| |||||| ||||||| ||||||| ||||| Sbjct 11384161 GCCCTCCCCGTTGACATGATCGGAATGAACTGCCGACTGATGTCCCAGTACATCGAGTTC 11384102 Query 58281 GTTGCCGACAGACTTTTGCTCGAACTGATTGGA---GAGCGTCATTACAACACGAAAAAT 58337 || ||||| | | ||||| | | | ||| || | |||||| || ||| Sbjct 11384101 GTCGCCGA---TCATCTGCTCCAGGAGCTCGGATGCGATAAGCTGTACAACGTCAAGAAT 11384045 Query 58338 CCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaa 58397 || ||||| || ||| | |||||| |||| || ||||| ||||| ||||| || Sbjct 11384044 CCATTTGACTTCATGGAGAACATCTCGATCGATGGAAAGACCAACTTCTTCGAGAAGCGC 11383985 Query 58398 GTTAGCGAATATCA 58411 ||| ||| ||||| Sbjct 11383984 GTTTCCGAGTATCA 11383971 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || ||||| ||||| | || || || | ||| Sbjct 4173737 ATGCAAATCTTCGTCAAGACACTCACTGGAAAAACCATCACTTTGGAAGTCGAGGCTTCC 4173796 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | ||| |||||||| || | || || |||||| Sbjct 4173797 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 4173856 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| | || || | ||| | || || ||| Sbjct 4173857 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAAC 4173916 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || |||||||||||||| ||||||| Sbjct 4173917 ATCCAGAAGGAATCGACTCTTCACTTGGTACT 4173948 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || ||||||||| |||| || ||| | || Sbjct 4174521 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTCG 4174580 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | |||||| | || |||||||||||| | || || |||||| Sbjct 4174581 GACACTATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAG 4174640 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 ||||| | || |||||||| || Sbjct 4174641 CAGCGATTGATTTTCGCTGGTAA 4174663 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || ||||| || || || || ||||| | || |||||| | || Sbjct 4174247 ATGCAGATTTTCGTGAAAACTCTTACTGGAAAGACTATCACTCTTGAGGTTGAAGCCTCG 4174306 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| |||||| | || |||||||||||| | || || || ||| Sbjct 4174307 GACACTATTGAAAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAG 4174366 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 ||||| | || |||||||| || Sbjct 4174367 CAGCGATTGATTTTCGCTGGTAA 4174389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764355046640