Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 196 6e-45 >seq5 Length=14578851 Score = 196 bits (216), Expect = 6e-45 Identities = 480/722 (66%), Gaps = 12/722 (2%) Strand=Plus/Minus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 ||||| || |||||||| || || | ||| || || || || |||||||||||| Sbjct 9911158 TCGAATTCCTCTCCCCAGCAATCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 9911099 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || ||| || | | || || ||||| |||||||| || | ||| ||||| | || Sbjct 9911098 CAATCTTGATCTTTTTCGACGCGCTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAAC 9911039 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 || || | | | ||||||| | | || || |||||| |||| | | ||| | Sbjct 9911038 AAGTCACGAGCAC---GTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCG 9910982 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | ||||| ||||| || |||||||| ||||| | |||| || |||||||| ||| Sbjct 9910981 AAGATATCGGCGTGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGTTTGTTACCT 9910922 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 || ||||| | ||| | ||||||||| || || || | | |||||| || | |||||| Sbjct 9910921 CCTTGATCAACGTAACGAGCGGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTG 9910862 Query 66279 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATAT--TACTAATTGATA 66336 ||||| |||||||| |||| || ||| ||||||| || | | | |||| | Sbjct 9910861 GATGTTCCATTGGTTCCGGCAATCACTGAGCCAGTTGCACGGATCTTGTGCACATTG--A 9910804 Query 66337 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 66396 |||| || || || || | || || || | ||||| | || || || || ||||| | Sbjct 9910803 GACCGATGCCTCCAGCACTCTTCGAAATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTC 9910744 Query 66397 CCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 | || || || |||| || || || || || |||||| || |||| | Sbjct 9910743 CGAGAATCGAGTCCTCGCTCATCGTCAACAAG-AAGCATGAAGACATCTGTGGACGGCAC 9910685 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| | || || | || ||||| || || || | | ||| || | | ||| Sbjct 9910684 GTTCCAGAGTTGAAGAGAGTTGGAGAGGCATGTGTCATGTACCGTTCGGACATCAAGTTG 9910625 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||||||||| || | | || || | || ||||| | ||||||||||| | | Sbjct 9910624 TACGTCTCAATGGCGGCGGAAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAGC 9910565 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 || ||||| |||||||| |||| | ||||| || || | | |||||| || | Sbjct 9910564 ATTTGCTGTGGTCTTTCGACGACTTCCTTGTTGATCTTGAGAAGGTAGGAACGCTCGAGC 9910505 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 66695 || || || || || ||| |||| || | |||| ||||| | || | |||||||| Sbjct 9910504 GTCTTGAATCCGAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACGATGGCGGAGTTGAGC 9910445 Query 66696 TT 66697 || Sbjct 9910444 TT 9910443 Score = 125 bits (138), Expect = 9e-24 Identities = 311/469 (66%), Gaps = 5/469 (1%) Strand=Plus/Minus Query 64828 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887 |||| |||| || ||||||| || | || || || ||||| | |||||||||| Sbjct 9912590 CCTTATCCACGGTAAATTGAACGGCGTTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 9912531 Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 | || || || || |||||||||| || ||||| || | || || || | Sbjct 9912530 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCGGCGTAGCTTG 9912471 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | | || || || || || | || || |||||||||||| ||||| | || |||| Sbjct 9912470 GCTTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCACGATCGGCAG 9912411 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 65066 |||| | || ||| ||| |||| || ||||| | || |||| ||| ||| ||| Sbjct 9912410 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGCTC-CTTGATA 9912352 Query 65067 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123 || ||||||| || | |||||||| |||||| | || || | | ||||| Sbjct 9912351 TCGTCTGGAATTCCTGGGATGTTCTGAATCGATCCATTGTTGGCAATGAGGCGGTTCTTC 9912292 Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 |||||||| |||| ||| ||||||| ||| | | || | || || || || | | Sbjct 9912291 ATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGACGATT 9912232 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 || || || || || | || | |||| ||| || || ||| || || || | || Sbjct 9912231 TGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAATCGAT 9912172 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 || || ||||| | || ||||| || || ||||| ||||| || |||| Sbjct 9912171 TCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAGCCA 9912123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169780632280