Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 203 5e-47 >seq5 Length=14578851 Score = 203 bits (224), Expect = 5e-47 Identities = 479/719 (67%), Gaps = 6/719 (1%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||| || |||||||| ||| || | ||| || || ||| || |||||||||||| Sbjct 9911158 TCGAATTCCTCTCCCCAGCAATCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 9911099 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || ||| ||| | | || || ||||| |||||||| || | ||| ||||| | || Sbjct 9911098 CAATCTTGATCTTTTTCGACGCGCTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAAC 9911039 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 | || | | | | ||| || ||| || |||||| |||| | | ||| | | Sbjct 9911038 AAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAG 9910979 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 ||||| | ||||| || |||||||| ||||| | |||| ||||||||||| ||||| Sbjct 9910978 ATATCGGCGTGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGTTTGTTACCTCCT 9910919 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 ||||| | ||| | ||||||||| || || || | | |||||| || | ||||||||| Sbjct 9910918 TGATCAACGTAACGAGCGGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGAT 9910859 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGAC 80218 || |||||||| |||| || ||| | ||||| || | | | |||| |||| Sbjct 9910858 GTTCCATTGGTTCCGGCAATCACTGAGCCAGTTGCACGGATCTTGTGCACATTG--AGAC 9910801 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | || || || || | || || || | ||||| | || || || || ||||| || Sbjct 9910800 CGATGCCTCCAGCACTCTTCGAAATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCGA 9910741 Query 80279 CTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || || || |||| || || || || || |||||| || |||| | ||| Sbjct 9910740 GAATCGAGTCCTCGCTCATCGTCAACAAG-AAGCATGAAGACATCTGTGGACGGCACGTT 9910682 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || | || || | || ||||| || || || | | ||| |||| | |||||| Sbjct 9910681 CCAGAGTTGAAGAGAGTTGGAGAGGCATGTGTCATGTACCGTTCGGACATCAAGTTGTAC 9910622 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 |||||||| || | || || | || ||||| | ||||||||||| | ||| Sbjct 9910621 GTCTCAATGGCGGCGGAAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAGCATT 9910562 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 ||||| |||||||| |||| | || || || || | | ||| || || | || Sbjct 9910561 TGCTGTGGTCTTTCGACGACTTCCTTGTTGATCTTGAGAAGGTAGGAACGCTCGAGCGTC 9910502 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 || || || || ||| |||| || | |||| ||||| | || | |||||||| || Sbjct 9910501 TTGAATCCGAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACGATGGCGGAGTTGAGCTT 9910443 Score = 138 bits (152), Expect = 2e-27 Identities = 314/469 (67%), Gaps = 5/469 (1%) Strand=Plus/Minus Query 78707 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766 |||| |||| || ||||||| || | || || || ||||| | |||||||||| Sbjct 9912590 CCTTATCCACGGTAAATTGAACGGCGTTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 9912531 Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 | || || || || ||||||||||||| ||||| || | || || || | Sbjct 9912530 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCGGCGTAGCTTG 9912471 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | | || || || || || | || || |||||||||||| ||||| | || |||| Sbjct 9912470 GCTTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCACGATCGGCAG 9912411 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 78945 |||| | || ||| ||| |||| || ||||| | || |||| ||| ||| ||| Sbjct 9912410 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGCTC-CTTGATA 9912352 Query 78946 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 || ||||||| || | |||||||| |||||| | || || | | ||||| Sbjct 9912351 TCGTCTGGAATTCCTGGGATGTTCTGAATCGATCCATTGTTGGCAATGAGGCGGTTCTTC 9912292 Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 ||||| || |||| ||| ||||||| ||| | | || | || || || || | | Sbjct 9912291 ATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGACGATT 9912232 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 || || || || || | || | |||| ||| || || ||| ||||| || | |||| Sbjct 9912231 TGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAATCGAT 9912172 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 || || ||||| | || ||||| || || || |||||||| || |||| Sbjct 9912171 TCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAGCCA 9912123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265504941880