Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 185 1e-41 >seq5 Length=14578851 Score = 185 bits (204), Expect = 1e-41 Identities = 475/719 (66%), Gaps = 6/719 (1%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 ||||| || |||||||| || || | ||| || || || || |||||||| ||| Sbjct 9911158 TCGAATTCCTCTCCCCAGCAATCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 9911099 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || ||| ||| | | || || ||||| |||||||| || | ||| ||||| | || Sbjct 9911098 CAATCTTGATCTTTTTCGACGCGCTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAAC 9911039 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 | || | | | | ||| || ||| || |||||| |||| | | ||| | | Sbjct 9911038 AAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAG 9910979 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 ||||| | ||||| || |||||||| ||||| | |||| || |||||||| ||||| Sbjct 9910978 ATATCGGCGTGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGTTTGTTACCTCCT 9910919 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||| | ||| | ||||||||| || || || | | |||||| || | ||||||||| Sbjct 9910918 TGATCAACGTAACGAGCGGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGAT 9910859 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG--CTAATTGATAGAC 72301 | |||||||| |||| || ||| | ||||| || ||| | ||||| ||| Sbjct 9910858 GTTCCATTGGTTCCGGCAATCACTGAGCCAGTTGCACGGATCTTGTGCACATTGA--GAC 9910801 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | || || || || | || || || | ||||| | || || || || ||||| || Sbjct 9910800 CGATGCCTCCAGCACTCTTCGAAATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCGA 9910741 Query 72362 CTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || || || |||| || || |||| || |||||| || |||| | ||| Sbjct 9910740 GAATCGAGTCCTCGCTCATCGTCAACAAGAAG-CATGAAGACATCTGTGGACGGCACGTT 9910682 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || | || || | || ||||| || || || | | ||| |||| | |||||| Sbjct 9910681 CCAGAGTTGAAGAGAGTTGGAGAGGCATGTGTCATGTACCGTTCGGACATCAAGTTGTAC 9910622 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 |||||||| || | || || | || ||||| | ||||||||||| | ||| Sbjct 9910621 GTCTCAATGGCGGCGGAAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAGCATT 9910562 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 ||||| |||||||| |||| | || || || || | | |||||| || | || Sbjct 9910561 TGCTGTGGTCTTTCGACGACTTCCTTGTTGATCTTGAGAAGGTAGGAACGCTCGAGCGTC 9910502 Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || || || ||| |||| || | |||| ||||| | || | || ||||| || Sbjct 9910501 TTGAATCCGAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACGATGGCGGAGTTGAGCTT 9910443 Score = 143 bits (158), Expect = 4e-29 Identities = 330/494 (67%), Gaps = 5/494 (1%) Strand=Plus/Minus Query 70790 CCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGC 70849 |||| |||| ||||| |||| || | || | || ||||| | |||||||| | Sbjct 9912590 CCTTATCCACGGTAAATTGAACGGCGTTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 9912531 Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAG 70909 | || || || || |||||||||| || ||||| || | || ||||| | Sbjct 9912530 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCGGCGTAGCTTG 9912471 Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969 | | ||| |||||||| || | ||||| |||||||||||| ||||| | || |||| Sbjct 9912470 GCTTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCACGATCGGCAG 9912411 Query 70970 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 71028 |||| | || ||| ||| |||| || ||||| | || |||| ||| ||| ||| Sbjct 9912410 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGCTC-CTTGATA 9912352 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 || ||||||| || | |||||||| |||||| | ||||| | | || || Sbjct 9912351 TCGTCTGGAATTCCTGGGATGTTCTGAATCGATCCATTGTTGGCAATGAGGCGGTTCTTC 9912292 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 ||||| || |||| ||| ||||||| ||| | | || | || || || || | | Sbjct 9912291 ATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGACGATT 9912232 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 || || || || || | || | ||||| ||| || || ||| || || || | || Sbjct 9912231 TGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAATCGAT 9912172 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 || || ||||| | || ||||| || || ||||| ||||| || |||| | ||||| Sbjct 9912171 TCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAGCCATGAGGAGACTG 9912112 Query 71266 TTTCTAAGACCATG 71279 || | || ||||| Sbjct 9912111 TTGCGAACTCCATG 9912098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136121148920