Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 4e-14 >seq5 Length=14578851 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||| | ||| | ||||| || ||||| |||||||||||| Sbjct 4175021 CCTCCACGGAGGCGAAGAACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAA 4174962 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || |||||||| || || || |||| || | ||||| || || || Sbjct 4174961 AGAGTACGTCCA-TCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGG 4174903 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| ||| || ||| | | || | ||||||| | ||| || Sbjct 4174902 AATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTCTCGATGGTGTCCGAAGCTTCGAC 4174843 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | |||||| ||||||||||| || ||||| || ||||| Sbjct 4174842 TTCGAGGGTGATCGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 4174795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012074071440