Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5 136 6e-27 >seq5 Length=14578851 Score = 136 bits (150), Expect = 6e-27 Identities = 225/318 (71%), Gaps = 10/318 (3%) Strand=Plus/Minus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||||||||||||| || ||||| | |||||||| |||||||| | || || Sbjct 11386305 CTTCTACGGATTCCAAATCGCCATCGAGAATATTCACTCGGAGATGTACTCAAAGCTCAT 11386246 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATG---CTCTTTAACGCAATCGACAC 125350 || | ||||| |||||| | || | | | |||| || || ||||| ||| | Sbjct 11386245 CGAGACCTACATCCGCGATGAG-AAGG--AGCGCATGAAGCTGTTCAACGCCATCTTCGA 11386189 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | | || || || ||||| | |||| | |||| ||||| ||| |||| | Sbjct 11386188 GTTCGAGTTCATCAAGAAGAAGGCCGACTGGGCGCTTCGTTGGATTTCCGACACCAAGGC 11386129 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTA 125469 |||| |||||| | ||| | |||||||||||||| ||||||||||||||| ||| | Sbjct 11386128 CTCGTTCGCCGAACGGCTGATCGCATTCGCCGCCGTCGAGGGCATCTTCTTTAGCGGATC 11386069 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 ||| || | || || ||||||||||||||||| || ||||| || |||| || | Sbjct 11386068 GTTC-GCATCGATTTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTTTGACACATTCCA 11386010 Query 125530 ACGAGTTTATATCTCGAG 125547 ||||| | |||||||| Sbjct 11386009 ACGAGCT--GATCTCGAG 11385994 Score = 122 bits (134), Expect = 1e-22 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || || || ||||| || |||||| |||| || || |||||| || ||||||||| Sbjct 11384185 ATTGAGCAGGAGTTCCTCACCGAAGCCCTCCCCGTTGACATGATCGGAATGAACTGCCGA 11384126 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT--GATTGGCC 125775 || |||| | ||||||| ||||| || || |||| ||| || | ||| | ||| || Sbjct 11384125 CTGATGTCCCAGTACATCGAGTTCGTCGCCGATCATCTGCTCCAGGAGCTCGGAT--GCG 11384068 Query 125776 GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835 ||| | ||||||| ||||||||| ||||| |||||| | ||| || | || || | Sbjct 11384067 ATAAGCTGTACAACGTCAAGAATCCATTTGACTTCATGGAGAACATCTCGATCGATGGAA 11384008 Query 125836 AGACCAACTTTTTCGAGAAG 125855 |||||||||| ||||||||| Sbjct 11384007 AGACCAACTTCTTCGAGAAG 11383988 Score = 107 bits (118), Expect = 3e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| || || || || ||||| ||||| || | ||| |||||||||| || Sbjct 9910905 CGTTACGTTGATCAAGGAGGTAACAAACGACCAGGAGCATTCGCCATCTACTTGGAGCCA 9910964 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || | || || ||| | | | || || ||| | || ||||||| | Sbjct 9910965 TGGCACGCCGATATCTTCGAGTTTGTTGCTCTTCGAAAGAACACCGGACCAGAAGAGGAA 9911024 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC 97040 || || | |||||||| | || ||||||||||||||| | ||||||||||||||| Sbjct 9911025 CGTGCTCGTGACTTGTTCTTGGCTCTCTGGGTGCCAGATCTCTTCATGAAGCGCGTC 9911081 Score = 86.0 bits (94), Expect = 9e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 98046 ACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTAC 98105 || ||||||||||| | ||| | | ||||| ||||||||||| | || | | | Sbjct 9912371 ACCGTCTGGGAGATCTCACAGAAGGAGATTATCGAGATGGCTGCCGATCGTGGAGCATTC 9912430 Query 98106 ATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG-TATGAC 98164 || || || || || |||| | || | ||| |||| | |||| | || || || Sbjct 9912431 ATCGATCAATCCCAGTCACTCAACATTCACATGGCCAAGCCAAGCTAC-GCCGCCATCAC 9912489 Query 98165 TTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAAC 98224 || || ||||| |||| |||||| ||||| |||||||| || |||||||| || | || Sbjct 9912490 ATCAATGCACTTCTACGGATGGAAGAAGGGACTCAAGACTGGAATGTACTACTTGCGTAC 9912549 Query 98225 AAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 ||| | || ||| ||| | | |||||| ||||| Sbjct 9912550 CAAGCCAGCTGTCAACGCCGTTCAATTTACCGTGGA 9912585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055800390920