Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 >seq5 Length=14578851 Score = 100 bits (110), Expect = 2e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || ||||| || || || |||||||| ||| ||| | | | || || Sbjct 1551614 AACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 1551673 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | ||||| | ||| ||||| |||||||||||| ||||| Sbjct 1551674 GAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTG 1551733 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||||||| || || || | || ||| || || Sbjct 1551734 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTT 1551793 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 ||| |||||||| || || || |||||||| ||||||| Sbjct 1551794 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAAAT 1551833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || ||||| ||||||||||| || |||| | ||||| ||||| Sbjct 4175454 ATGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGACAGGGTTCTACCATCTTCCAATTG 4175395 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | || | | |||||||| ||| |||||||| || || || || Sbjct 4175394 CTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTT 4175335 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || |||| ||||| || | ||| || || | || ||||| || || || Sbjct 4175334 GGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACTTCGAGAGTGATGGTCTTTCCAGT 4175275 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || || || ||||| Sbjct 4175274 CAGAGTCTTGACGAAGATCTGCAT 4175251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362177580040347