Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 2e-11 >seq1 Length=15455979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 175/256 (68%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAG-CGGTTAA--CCTC 5295 ||| || || ||||||||| || || ||||| |||| ||||| || || | || Sbjct 5682264 TCCAGTTGATCCGAATCCATTATCTCCTCGGTCAGTGTTCTCCAACTCGCTTGCTGCTTC 5682323 Query 5296 TTGAACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTT 5355 | ||| || ||||||| | | || || | ||||| || || || || |||||||| Sbjct 5682324 ATAAAC-GCAATGTGCGATTTTC--TCACAGACGAGCTGTGCAATTCTATCACCCTTCTT 5682380 Query 5356 AACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTC 5415 ||||||||||| | || | |||||| || || | ||| || | || ||||| || Sbjct 5682381 CACCTCAAAGTCAGTTTTGCTGAAGTTGAAAAGAAGGACCTTGATCTCTCCACGGTAATC 5682440 Query 5416 TTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGG 5475 || | ||| ||||| || || || || ||||| ||| | || || ||||| ||||| Sbjct 5682441 ACTATCAACAACACCAGCCCCAACATCAATGAAGTGCTTGGCTGCGAGACCGGATCGTGG 5682500 Query 5476 TGCTATGCGTCCGTAG 5491 || | | ||| ||| Sbjct 5682501 AGCAACTCTTCCATAG 5682516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447748345945040