Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 >seq5 Length=14578851 Score = 118 bits (130), Expect = 1e-21 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | ||||||||| | ||| || ||||| || | ||| || || Sbjct 4175253 CATTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 4175194 Query 94837 GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 | || || | |||||| ||||| ||||| | ||||| |||| |||||||||| Sbjct 4175193 CG--AGAGGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCT 4175136 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 || || || ||||| ||||| | || || |||||||| | | |||||| | Sbjct 4175135 GGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCAATAGTGTCCGAAGCT 4175076 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | ||||| || ||||| ||||| || || || ||||||||||| Sbjct 4175075 TCGACCTCGAGGGTGATAGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4175023 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | |||||||| | ||| |||||||| || | ||| || || Sbjct 4173967 CATTCCTCCTCTGAGGCGGAGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTC 4173908 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| | |||||| ||||| |||||| | ||||| | ||| ||||| ||||| Sbjct 4173907 CGAAAGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGG 4173848 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || || || ||||| | ||||| || ||||| ||| || || | || Sbjct 4173847 TGGGATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTC 4173788 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||||||||||||||| || || || || ||||| ||||| Sbjct 4173787 GACTTCCAAAGTGATGGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 4173737 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| ||||||||||||||||| ||||| ||||| ||||| | ||||| Sbjct 4174107 TTACCGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTA 4174048 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 |||||||| | | ||||| | | ||||| || | ||||||||||||||||| Sbjct 4174047 GCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGTG 4173988 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||| Sbjct 4173987 AGTGTCTTGACGAAGATCTGCAT 4173965 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| || ||||| || | ||| || ||| | ||| |||||| Sbjct 1551615 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 1551674 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || |||||| | ||||| ||||||||||| ||||| ||||| ||||| ||||| | Sbjct 1551675 AGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 1551734 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| ||| || || | | ||||| || | | || || || Sbjct 1551735 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTTA 1551794 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| || || ||||| |||||| Sbjct 1551795 CCCGTCAGAGTCTTGACGAAGATTTGCATG 1551824 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || || |||| ||||||||||| ||||| ||||| ||||| | || || || |||||| Sbjct 4174380 AAAATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACG 4174321 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | |||||| | | || || |||| ||||| || |||||||||||||||||| Sbjct 4174320 TTTTCAATAGTGTCCGAGGCTTCAACCTCAAGAGTGATAGTCTTTCCAGTAAGAGTTTTC 4174261 Query 94994 ACAAAGATCTGCAT 95007 || || |||||||| Sbjct 4174260 ACGAAAATCTGCAT 4174247 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||| ||||| || || | ||| |||| || |||||| Sbjct 4175447 GTTGACTCCTTTTGGATGTTGTAATCCGACAGGGTTCTACCATCTTCCAATTGCTTTCCG 4175388 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | ||| || || ||||| || || ||||| || || | || || ||||| Sbjct 4175387 GCGAAGATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTGGCCTTA 4175328 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||||| ||||| || | |||||||| |||||||| ||||| Sbjct 4175327 ACGTTTTCGATGGTGTCAGAAGCTTCGACTTCGAGAGTGATGGTCTTTCCAGTCAGAGTC 4175268 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 4175267 TTGACGAAGATCTGCAT 4175251 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 |||||| |||||||| | ||| |||||| | ||| |||||| || || ||||| Sbjct 4174992 AGTAGACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGCTTTCC 4174933 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 | | ||||| | ||| ||||| ||||| ||||| || || ||||| | ||| || || || Sbjct 4174932 GGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTGGCTTT 4174873 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| ||| ||||| | ||||| || | ||||| || ||||| || | || Sbjct 4174872 GACATTCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAATGT 4174813 Query 94990 TTTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 4174812 CTTGACGAAGATCTGCAT 4174795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289143464120