Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9 228 1e-55 seq11 192 9e-45 seq1 176 7e-40 >seq9 Length=17485439 Score = 228 bits (252), Expect = 1e-55 Identities = 196/240 (82%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||||||||||||||||||||| Sbjct 8445295 GCCAAGCGCCATCGCAAGGTC-CTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTAT 8445353 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| |||||||||||||||||||||||| |||||||| | |||| ||||| | Sbjct 8445354 TCGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAAGAAAC 8445413 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | |||||| ||| ||| |||| ||||||| || |||| ||| Sbjct 8445414 CCGTGGAGTCCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTATTGCGA 8445473 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||| ||||||| ||||||| || ||||| || ||||| Sbjct 8445474 GCACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGG 8445533 Score = 228 bits (252), Expect = 1e-55 Identities = 196/240 (82%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||||||||||||||||||||| Sbjct 8457692 GCCAAGCGCCATCGCAAGGTC-CTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTAT 8457750 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| |||||||||||||||||||||||| |||||||| | |||| ||||| | Sbjct 8457751 TCGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAAGAAAC 8457810 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | |||||| ||| ||| |||| ||||||| || |||| ||| Sbjct 8457811 CCGTGGAGTCCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTATTGCGA 8457870 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||| ||||||| ||||||| || ||||| || ||||| Sbjct 8457871 GCACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGG 8457930 Score = 223 bits (246), Expect = 5e-54 Identities = 195/240 (81%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||||||||||||||||||||| Sbjct 7694866 GCCAAGCGCCATCGCAAGGTC-CTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTAT 7694924 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| |||||||||||||||||||||||| |||||||| | |||| || || | Sbjct 7694925 TCGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAAAC 7694984 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | |||||| ||| ||| |||| ||||||| || ||| ||| Sbjct 7694985 CCGTGGAGTTCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTACTGCGA 7695044 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||| ||||||| ||||||| || ||||| || ||||| Sbjct 7695045 GCACGCCAAGAGGAAGACTGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGG 7695104 Score = 223 bits (246), Expect = 5e-54 Identities = 195/240 (81%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||||||||||||||||||||| Sbjct 7833861 GCCAAGCGCCATCGCAAGGTC-CTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTAT 7833803 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| |||||||||||||||||||||||| |||||||| | |||| || || | Sbjct 7833802 TCGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAAAC 7833743 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | |||||| ||| ||| |||| ||||||| || ||| ||| Sbjct 7833742 CCGTGGAGTTCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTACTGCGA 7833683 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||| ||||||| ||||||| || ||||| || ||||| Sbjct 7833682 GCACGCCAAGAGGAAGACTGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGG 7833623 Score = 223 bits (246), Expect = 5e-54 Identities = 195/240 (81%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||||||||||||||||||||| Sbjct 7839217 GCCAAGCGCCATCGCAAGGTC-CTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTAT 7839159 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| |||||||||||||||||||||||| |||||||| | |||| || || | Sbjct 7839158 TCGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAAAC 7839099 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | |||||| ||| ||| |||| ||||||| || ||| ||| Sbjct 7839098 CCGTGGAGTTCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTACTGCGA 7839039 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||| ||||||| ||||||| || ||||| || ||||| Sbjct 7839038 GCACGCCAAGAGGAAGACTGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGG 7838979 >seq11 Length=19495157 Score = 192 bits (212), Expect = 9e-45 Identities = 186/239 (78%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || ||||||||||||||||| ||||||||||| Sbjct 8695713 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCTATT 8695772 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||||||| |||||||| | |||| || |||| | Sbjct 8695773 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACT 8695832 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 8695833 CGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAG 8695892 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| |||||||||| ||||| |||||||| Sbjct 8695893 CACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGG 8695951 Score = 188 bits (208), Expect = 1e-43 Identities = 185/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || ||||||||||||||||| |||||||| || Sbjct 1249082 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATT 1249023 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||||||| |||| ||| | |||| || |||| | Sbjct 1249022 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACT 1248963 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | |||||| ||| ||| |||| ||| || || ||| |||| Sbjct 1248962 CGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAG 1248903 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| |||||| ||||||| |||||||||| ||||| |||||||| Sbjct 1248902 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGG 1248844 Score = 185 bits (204), Expect = 1e-42 Identities = 207/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || ||||||||||||||||| |||||||| || Sbjct 1241828 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATT 1241887 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||||||| |||| ||| | |||| || |||| | Sbjct 1241888 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACT 1241947 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | |||||| ||| ||| |||| ||| || || ||| |||| Sbjct 1241948 CGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAG 1242007 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| ||||||| |||||||||| ||||| |||||||| Sbjct 1242008 CACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGA 1242067 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 | | | || || || ||| | |||| || | ||| Sbjct 1242068 AGAACCCTGTACGGATTCGGAGGATAATTTTATTATC 1242104 Score = 185 bits (204), Expect = 1e-42 Identities = 185/239 (77%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || |||||||| |||||||| ||||||||||| Sbjct 8691540 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCA-GGAATCACGAAGCCAGCTATT 8691482 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||||||| |||||||| | |||| || |||| | Sbjct 8691481 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACT 8691422 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 8691421 CGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAG 8691362 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| |||||||||| ||||| |||||||| Sbjct 8691361 CACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGG 8691303 Score = 123 bits (136), Expect = 4e-24 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 16482 AGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCT 16541 |||||||||| || ||||| |||||||||||||||||||||||| |||| ||| | ||| Sbjct 13548697 AGCCAGCTATTCGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCCGGACTCATCT 13548756 Query 16542 ATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCC 16601 | || || | ||||| || ||||| | || || ||| || |||| ||| || || Sbjct 13548757 ACGAGGAAACTCGTGGAGTACTGAAGGTGTTTCTTGAGAATGTCATCCGTGACGCCGTCA 13548816 Query 16602 ACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGA 16661 ||| |||||||| || | ||||| ||||| | ||||| ||||||| || |||| Sbjct 13548817 CCTACTGTGAGCACGCCAAGAGAAAGACCGTCACAGCGATGGACGTCGTCTACGCTTTGA 13548876 Query 16662 AACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | || || || | | |||| || ||||| Sbjct 13548877 AGCGCCAGGGAAGAACTCTTTACGGATTTGG 13548907 >seq1 Length=15455979 Score = 176 bits (194), Expect = 7e-40 Identities = 205/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| |||||||||||||| |||||||||||||| ||| Sbjct 5552144 GCCAAGCGCCATCGCAAAGTTCTTCGTGATAACATCCAAGGTATCACCAAGCCAGCCATC 5552203 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || || ||||||||| | || ||| | |||| || || | Sbjct 5552204 CGCCGTCTCGCCAGAAGAGGAGGTGTCAAGCGTATATCCGGACTCATCTACGAGGAAACC 5552263 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| |||||| || ||| |||| Sbjct 5552264 CGTGGAGTTCTCAAGGTGTTCCTTGAGAACGTGATCCGTGATGCCGTCACCTACTGCGAG 5552323 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| ||||||| || ||||| || ||||| Sbjct 5552324 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCCTTGAAGCGCCAAGGA 5552383 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 | | | || || || ||| | |||| || | ||| Sbjct 5552384 AGAACCCTCTACGGATTCGGAGGATAATTTTATTATC 5552420 Score = 125 bits (138), Expect = 1e-24 Identities = 194/273 (71%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 16438 GCGTCATCGCAGATCTC-TTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 |||||| ||| | | || |||| ||||||||||||||||||||||||||||| ||||| | Sbjct 6696893 GCGTCACCGC-GCTGTCCTTCGTGATAACATCCAAGGAATCACCAAGCCAGCCATCCGCC 6696951 Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 |||| || | | || || ||||||| | || | | || || || | |||| Sbjct 6696952 GTCTCGCCAGAAGAGG-AGAATCAAGCGGATTTCAAACCTCATTTACGAGGAAACCCGTG 6697010 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 ||| | ||| | ||||| ||| ||| |||| ||||||| || ||| ||| |||| Sbjct 6697011 GAGTTCTCAAGGTGTTCCTTGAGAACGTGATCCGTGATGCTGTCACCTACTGCGAACACG 6697070 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 | || | |||||| ||||| ||||||| ||||||| || || || ||||||| | | Sbjct 6697071 CCAAGAGAAAGACTTTCACCGCCATGGACGTCGTCTACGCCTTTAAGAGTCAAGGAAGAA 6697130 Query 16677 AGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 | || || || ||| | |||| || | ||| Sbjct 6697131 CACTCTACGGATTCGGAGGATAATTTTATCATC 6697163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074864449331