Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1 100 6e-17 seq4 93.3 8e-15 seq11 80.6 5e-11 >seq1 Length=15455979 Score = 100 bits (110), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 4470 CGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGT-T 4528 ||||||| | || ||||| || || ||||| |||||| ||||||| | | |||||| | Sbjct 9858692 CGATAAAGAAAAATATGTAATCCATTATAAGAATTTGCTACAATGTCTCCAATTAGGTCT 9858633 Query 4529 TAGTTCTTAAGAAAATACACCTAGTCTTGAAA--TTTGAGCAATCAGACTGGCTCAAATC 4586 || || ||||| || ||| || || ||| | | || ||||||||| Sbjct 9858632 TAAAGTGAAAAAAAATTCA--TAGAATTCTAACCTTTAAAGATAGTGATTGGCTCAAAGA 9858575 Query 4587 ATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTT 4646 |||||| || | || || ||||||| ||| || |||||||| |||||| | || Sbjct 9858574 ATATATTGAAATGAACACTAATCTTCGAAAACAAGCAAACAATGAGTTTGAAAAAGATTT 9858515 Query 4647 TTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 | |||||||||||||| | ||||||||||| || ||||| ||||| Sbjct 9858514 CTTCAAATTAATGAATAACTCAGTTTTTGGAAAAACTATGGAAAATGT 9858467 >seq4 Length=16627154 Score = 93.3 bits (102), Expect = 8e-15 Identities = 159/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 4471 GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTA 4530 |||||| | || ||||||||||| ||| |||| ||| |||||| | | ||||| || Sbjct 8222955 GATAAAGAGAAATATGTTATTCATTATGAAAACTTGTTGCAATGTCTGCAATTAGGACTA 8222896 Query 4531 GTTCTTAAGAAAATACACCTAGTCTTGAAATTT-----GAGCAATCAGACTGGCTCAAAT 4585 |||| || ||||| | | | | || ||| ||| ||| | | |||| Sbjct 8222895 AAAATTAAAAAGATACATCGAATTCTTAATTTTAAAGAGAGTAATTGGT-TAGCTC---- 8222841 Query 4586 CATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCT 4645 | || || || | ||||| ||||||| ||| || |||||||| |||||| ||| Sbjct 8222840 CTTACATTGAAATGAATACTAATCTTCGAAAACAAGCAAAAAATGAGTTTGAAAAACACT 8222781 Query 4646 TTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 | | |||||||||||||| | ||||||||||| || ||||| ||||| Sbjct 8222780 TCTTCAAATTAATGAATAACTCAGTTTTTGGAAAAACTATGGAAAATGT 8222732 >seq11 Length=19495157 Score = 80.6 bits (88), Expect = 5e-11 Identities = 90/118 (76%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 4584 ATCATATATCGATAAAAATACCG-CATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaa 4642 ||| ||||| || ||||||| | || ||||| | ||||| ||||| || || ||| Sbjct 18542794 ATCTTATATAGAATTAAATACCAACTTGAGGAAAAAT-GCTAAAAATGATTTTGAGAAAG 18542736 Query 4643 aCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAA 4700 |||||| |||| | ||||| ||| | || ||||| ||||| ||||||||||| |||| Sbjct 18542735 ACTTTTTTAAACTTATGAACAATTCTGTGTTTGGTAAGACTATGGAGAATGTTAGAAA 18542678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97973973015318