Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq9 84.2 4e-11 >seq9 Length=17485439 Score = 84.2 bits (92), Expect = 4e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 193979 AGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATT 194038 ||||||||| || ||||| |||||||| || | | | || ||| | |||| Sbjct 4619873 AGGTGAGACCTTCGTAACCCGTAAGATCACTCGCTCCGTCGCCAAAATCAGTCTTGGTCA 4619814 Query 194039 ACAGAAGATTC--TTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAG 194096 ||| ||| || || | || || ||||| | |||| | |||||||||||||| Sbjct 4619813 ACA--AGAATCGATTGAACTCGGAAATCTGAGTGCTCTTCGTGATTGGGGACACGCCCGA 4619756 Query 194097 GATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATT 194156 || || || ||||| |||||| ||| | ||||| |||| ||| ||||| | ||||||| Sbjct 4619755 GAGTACGTCGAAGCAATGTGGAGAATTCTTCAACACGATGCACCAGATGACTTTGTGATT 4619696 Query 194157 GCTACAGGTGAACAGTATTCTGTTAGAGACTT 194188 || || || |||||| ||| ||||| || Sbjct 4619695 GCGACTGGAAAACAGTTCAGTGTCAGAGAATT 4619664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807551495340520