Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07-
02] 367 sequences; 108,384,165 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq5 118 1e-21
>seq5
Length=14578851
Score = 118 bits (130), Expect = 1e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827
|||||| | || || || ||||| || ||||| |||||||| ||||| | ||| |
Sbjct 4174794 AATGCAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTC 4174853
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
|||||||||||| | |||||| |||||| ||||| || || || || || || ||
Sbjct 4174854 GGACACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCA 4174913
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
|| |||||||| | || ||| || |||||||| |||| | | | ||| || ||
Sbjct 4174914 GCAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAA 4174973
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||| ||||| || |||||| ||||||| || ||
Sbjct 4174974 CATCCAAAAGGAGTCTACTCTCCATCTCGTTCT 4175006
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827
|||||| | || || || || | |||||||| | ||||| ||||| | ||| |
Sbjct 4175250 AATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAAGTCGAAGCTTC 4175309
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
||||||||||| | || || ||||| || || ||||| || || || || ||
Sbjct 4175310 TGACACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCA 4175369
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
||| |||||||| | || ||| || ||| | ||||||| ||||| | | || || ||
Sbjct 4175370 ACAGAGACTCATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACCCTGTCGGATTACAA 4175429
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||| ||||| || || || ||||||| |||||
Sbjct 4175430 CATCCAAAAGGAGTCAACACTCCATCTTGTCCT 4175462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478660204136240
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |