Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 149 2e-30 >seq5 Length=14578851 Score = 149 bits (164), Expect = 2e-30 Identities = 431/651 (66%), Gaps = 18/651 (3%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGT-ATCAATGGTGATATTGTTGA 363449 ||||||| |||||| | ||| |||||||| |||| ||||| || | || || Sbjct 9910491 TTCGGATTCAAGACGCTCGAGCGTTCCTACCT-TCTCAAGATCAACAAGGAAGTCGTCGA 9910549 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 | | || ||||| ||| | |||||||| || ||||| ||||| | || || || Sbjct 9910550 AAGACCACAGCAAATGCTGATGCGTGTCGCCATTGGAATCCACGGAAAAGACATTTCCGC 9910609 Query 363510 CGCGATTGAAACATATAAGCTTCTAAGTGCT--CGTGTAT-TCACGCACGCCACGCCAAC 363566 ||| ||||| || || || ||| | || | || ||| | || || ||| | ||||| Sbjct 9910610 CGCCATTGAGACGTACAA-CTTG-ATGTCCGAACG-GTACATGACACATGCCTCTCCAAC 9910666 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||| ||||||| | ||||||||||||||| ||||| | | | |||| Sbjct 9910667 TCTCTTCAACTCTGGAACGTGCCGTCCACAGATGTCTTCATGCTTCTTGTTGACGATGAG 9910726 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 || || || || || |||| ||||| | ||| | || ||||| ||||| |||| Sbjct 9910727 CGAGGACTCGATTCTCGGAATCTACGACACTTTGAAGCAGTGCGCTCTGATTTCGAAGAG 9910786 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--GAACAGTTACATTCGC 363744 ||| || || || ||| | | ||||| | |||||| | |||| | || | Sbjct 9910787 TGCTGGAGGCATCGGTCTCAATGTGCACAAGATCCGTGCAACTGGCTCAGTGA--TTGCC 9910844 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 || || ||| || ||||| || | || ||||||||||| | |||| || || Sbjct 9910845 GGAACCAATGGAACATCCAATGGACTCATACCAATGCTTCGTGTCTACAACAACACCGCT 9910904 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | ||||| || || || || || || ||| || || || || || | ||||| Sbjct 9910905 CGTTACGTTGATCAAGGAGGTAACAAACGACCAGGAGCATTCGCCATCTACTTGGAGCCA 9910964 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG---AAAAGAGGAA 363921 || |||||||| || |||||| ||| || || || ||||| || | |||||||| Sbjct 9910965 TGGCACGCCGATATCTTCGAGTTTGTTGCTCTTCGAAAGAACACCGGACCAGAAGAGGAA 9911024 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 ||||| ||||| |||||| || || ||||| | || | || ||||||||||| Sbjct 9911025 ---CGTGCTCGTGACTTGTTCTTGGCTCTCTGGGTGCCAGATCTCTTCATGAAGCGCGTC 9911081 Query 363982 GAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTT 364032 || || | | ||||||| | | |||||| ||| || ||||| ||| Sbjct 9911082 GAAAAAGATCAAGATTGGTCGTTGATGTGCCCATGCGAGTGCCCAGGACTT 9911132 Score = 104 bits (114), Expect = 6e-17 Identities = 521/830 (63%), Gaps = 55/830 (7%) Strand=Plus/Plus Query 364378 AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG-AGCGTTCTA 364435 ||||| ||||| | || ||| || |||||||||||| || || || | | || | Sbjct 9911706 AATCTGAACAAGATCATTGACGTCAACTATTATCCAATTGAAGAGGCTCGCAAC--TCGA 9911763 Query 364436 ATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGC 364495 | ||||| ||||| || || ||||| || || || || ||||||||| || ||| || Sbjct 9911764 ACATGCGCCATCGTCCAATCGGTCTCGGAGTTCAAGGACTCGCTGACTGCTTCATGTTGA 9911823 Query 364496 T-CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACA 364554 | | || |||| || || | || | | ||| || ||| ||||| || || Sbjct 9911824 TGCGTTAT-CCATTCACATCTCCACAGGCCAGAGATCTCAACAAGAGAATCTTCGAGACC 9911882 Query 364555 ATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCT 364614 || || | || ||| || ||| || || ||||| ||| | ||| |||||| Sbjct 9911883 ATCTACTACGCTGCATTGGAAGCTAGTTGCGAGTTGGCTGAAAGAGATGGACCATACTCT 9911942 Query 364615 ACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACG 364674 || |||||||| || || |||| ||||| || | ||||||||| | ||| || || Sbjct 9911943 ACATATGAGGGATCTCCAGTTTCCAAGGGACAACTTCAGTTTGATATGTGGGGAGTTACT 9912002 Query 364675 CCATCTGTCCGATGGAACTGGGATACGCTACG---------------------------- 364706 ||| || | ||| |||||||| ||| || Sbjct 9912003 CCAACTAATCAATGCAACTGGGACGAGCTTCGCAAGAAAATCGCCAAGTGAGTTTTGAAA 9912062 Query 364707 -TTC--------CAA--CGTTAA--------GAAGCATGGTACTCGCAACTCCCTCGTTA 364747 ||| ||| |||| | |||||| ||||||| ||| | | Sbjct 9912063 ATTCAGAGTATTCAATTTATTAATGTTCTCTCAGGCATGGAGTTCGCAACAGTCTCCTCA 9912122 Query 364748 CAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAAC 364807 || || ||||| || ||||| || || |||||||||||||||||||| | | || | Sbjct 9912123 TGGCTCCAATGCCAACTGCTTCCACCGCTCAGATCCTCGGAAACAACGAATCGATTGAGC 9912182 Query 364808 CGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATA 364867 | | || || | || || || || || || ||||| || || | | || || Sbjct 9912183 CATACACCTCGAACATCTACTCTCGTCGTGTGCTCTCCGGTGACTTCCAAATCGTCAACC 9912242 Query 364868 AGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATA 364927 || | | |||||| | ||| | || ||||| || ||||||||| Sbjct 9912243 CACACATGCTGAAGGATTTGGTCGAGAGAGGATTGTGGACCGATGAGATGAAGAACCGCC 9912302 Query 364928 TCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTA 364987 |||| ||| ||||| || | |||||||| |||||| ||||||| ||| | ||| Sbjct 9912303 TCATTGCCAACAATGGATCGATTCAGAACATCCCAGGAATTCCAGACGATATCAAGGAGC 9912362 Query 364988 TTTACAAAACCGTATGGGAAATTTC-CATGCGAACTCTCATTGATATGGCGGCCGATCGC 365046 ||||| ||||| ||||| || || || | | | || || ||||| |||||||| Sbjct 9912363 TTTACCTCACCGTCTGGGAGATCTCACAGAAGGA-GATTATCGAGATGGCTGCCGATCGT 9912421 Query 365047 GGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCC 365106 || || || ||| ||| |||||| | ||| | |||| | |||||| || |||| Sbjct 9912422 GGAGCATTCATCGATCAATCCCAGTCACTCAACATTCACATGGCCAAGCCAAGCTACGCC 9912481 Query 365107 AAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | ||||| ||||| |||||||| ||||| || || ||||| || Sbjct 9912482 GCCATCACATCAATGCACTTCTACGGATGGAAGAAGGGACTCAAGACTGG 9912531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347471386994