Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq324 118 7e-22 seq11 86.0 4e-12 >seq324 Length=2336 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct 1065 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGT 1124 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| ||||| ||||||| Sbjct 1125 TAATCCATTCATGCGCGTCAACAATTAAATGACGA 1159 >seq11 Length=19495157 Score = 86.0 bits (94), Expect = 4e-12 Identities = 108/148 (73%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 6156 ACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAA 6215 |||| ||||| | || ||||| || ||| ||| || || |||||||||||||||| Sbjct 2098319 ACCAAGATGG---CTCTCAACGTGAACCGTGCTGTCGCTGATCCGTTCTACCGCTACAAG 2098263 Query 6216 ATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTC 6275 ||||| | | || |||||||| || ||||| || || || || |||||||| Sbjct 2098262 ATGCCAAAGCTGTCGGCTAAGGTCGAAGGCAAGGGCAATGGAATCAAGACCGTCATCTCG 2098203 Query 6276 AACATGCCTGAAGTCGCTAAGGCGCTCG 6303 |||||| |||| |||| ||||| |||| Sbjct 2098202 AACATGTCTGATATCGCGAAGGCTCTCG 2098175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945701843977