Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 190 3e-43 >seq5 Length=14578851 Score = 190 bits (210), Expect = 3e-43 Identities = 479/722 (66%), Gaps = 12/722 (2%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||| || |||||||| || || ||||| || || || || |||||||||||| Sbjct 9911158 TCGAATTCCTCTCCCCAGCAATCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 9911099 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || ||| || | | || || ||||| |||||||| || | ||| ||||| | || Sbjct 9911098 CAATCTTGATCTTTTTCGACGCGCTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAAC 9911039 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAGGAACGCC 63169 | || | | | ||||||| | | || || |||||| |||| | | ||| | Sbjct 9911038 AAGTCACGAGCAC---GTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCG 9910982 Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229 | ||||| | ||||| || |||||||| ||||| | |||| || |||||||| ||| Sbjct 9910981 AAGATATCGGCGTGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGTTTGTTACCT 9910922 Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289 || ||||| | ||| | ||||||||| || || || | | |||||| || | |||||| Sbjct 9910921 CCTTGATCAACGTAACGAGCGGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTG 9910862 Query 63290 GATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATA 63347 ||||| |||||||| || | || ||| | ||||| || | | | |||| | Sbjct 9910861 GATGTTCCATTGGTTCCGGCAATCACTGAGCCAGTTGCACGGATCTTGTGCACATTG--A 9910804 Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 63407 |||| || || || || | || || || | ||||| | || || || || ||||| | Sbjct 9910803 GACCGATGCCTCCAGCACTCTTCGAAATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTC 9910744 Query 63408 CCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466 | || || || |||| || || || || || |||||| || |||| | Sbjct 9910743 CGAGAATCGAGTCCTCGCTCATCGTCAACAAG-AAGCATGAAGACATCTGTGGACGGCAC 9910685 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| | || || | || ||||| || || || | | ||| || | | ||| Sbjct 9910684 GTTCCAGAGTTGAAGAGAGTTGGAGAGGCATGTGTCATGTACCGTTCGGACATCAAGTTG 9910625 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||||||||| || | | || || | || ||||| | ||||||||||| | | Sbjct 9910624 TACGTCTCAATGGCGGCGGAAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAGC 9910565 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 || ||||| |||||||| |||| | ||||| || || | | |||||| || | Sbjct 9910564 ATTTGCTGTGGTCTTTCGACGACTTCCTTGTTGATCTTGAGAAGGTAGGAACGCTCGAGC 9910505 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706 || || || || || ||| |||| || | |||| ||||| | || | |||||||| Sbjct 9910504 GTCTTGAATCCGAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACGATGGCGGAGTTGAGC 9910445 Query 63707 TT 63708 || Sbjct 9910444 TT 9910443 Score = 129 bits (142), Expect = 7e-25 Identities = 312/469 (67%), Gaps = 5/469 (1%) Strand=Plus/Minus Query 61839 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 61898 |||| |||| || ||||||| || | || || || ||||| | |||||||||| Sbjct 9912590 CCTTATCCACGGTAAATTGAACGGCGTTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 9912531 Query 61899 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 61958 | || || || || |||||||||| || ||||| || | || || || | Sbjct 9912530 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCGGCGTAGCTTG 9912471 Query 61959 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62018 | | || || || || || | || || |||||||||||| ||||| | || |||| Sbjct 9912470 GCTTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCACGATCGGCAG 9912411 Query 62019 CCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 62077 |||| | |||||| ||| |||| || ||||| | || |||| ||| ||| ||| Sbjct 9912410 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGCTC-CTTGATA 9912352 Query 62078 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134 || ||||||| || | |||||||| |||||| | || || | | ||||| Sbjct 9912351 TCGTCTGGAATTCCTGGGATGTTCTGAATCGATCCATTGTTGGCAATGAGGCGGTTCTTC 9912292 Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 |||||||| |||| ||| ||||||| ||| | | || | || || || || | | Sbjct 9912291 ATCTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGACGATT 9912232 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 || || || || || | || | |||| ||| || || ||| || || || | || Sbjct 9912231 TGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAATCGAT 9912172 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 || || ||||| | || ||||| || || ||||| ||||| || |||| Sbjct 9912171 TCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAGCCA 9912123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629093213200