Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 >seq5 Length=14578851 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| || ||||||| | ||||| || | || Sbjct 4175754 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4175813 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| || ||||| ||||| Sbjct 4175814 GACACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAG 4175873 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || || | |||||| || ||| ||||| Sbjct 4175874 CAGCGCTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGACGCACTTTGTCCGACTACAAC 4175933 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 || ||||| || || || || ||| | || || | || | |||||| || Sbjct 4175934 ATCCAAAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTTCGTGGAGGAGAT 4175984 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||||||| || | ||||| ||||||| || | || Sbjct 4174520 AATGCAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTC 4174579 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||||||| | || |||| || ||| ||||| ||||| || ||||| || Sbjct 4174580 GGACACTATCGAG--AATGTCAAAGC-CAAGATCCAGGACAAGGAAGGAATCCCACCAGA 4174636 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAA 25141 ||| ||||| | ||||| || || || Sbjct 4174637 CCAGCAGCGATTGATTTTCGCTGGTAA 4174663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326061805105