Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 >seq5 Length=14578851 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || ||| |||| || ||||| ||| | | Sbjct 4174795 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTCG 4174854 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || ||||||||||||||||| |||||||| || || Sbjct 4174855 GACACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAG 4174914 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||| || || | |||||| || || | |||||||||||| Sbjct 4174915 CAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAAC 4174974 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || || | ||| | ||| | || | || |||||| Sbjct 4174975 ATCCAAAAGGAGTCTACTCTCCATCTCGTTCTTCGCCTCCGTGGAGGT 4175022 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || ||||| || | | || ||||| || || || Sbjct 1551823 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTCCCCTCGAAGTCGAGGCCTCC 1551764 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || ||||||||||| || |||||||| || || Sbjct 1551763 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 1551704 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || || | |||||| || || ||||||| |||||| Sbjct 1551703 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 1551644 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 || || || || ||||| | || || ||| | || | || |||||||| Sbjct 1551643 ATCCAGAAGGAGTCCACTCTCCACTTGGTTCTCCGTCTTCGTGGAGGTTT 1551594 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| || || || ||||| |||| | || ||||| | || Sbjct 4173509 ATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCTTGGAGGTGGAGGCTTCC 4173568 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| ||||| |||||||||||||| || ||||| || || Sbjct 4173569 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 4173628 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||| || ||| | |||||| | || | || || |||||| Sbjct 4173629 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAAC 4173688 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 4173689 ATCCAGAAGGAGTCCAC 4173705 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || ||||| ||||| | ||||| || | || Sbjct 4173737 ATGCAAATCTTCGTCAAGACACTCACTGGAAAAACCATCACTTTGGAAGTCGAGGCTTCC 4173796 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| ||||| |||||||||||||| || ||||| || || Sbjct 4173797 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 4173856 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||| || ||| | |||||| | || | || || |||||| Sbjct 4173857 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAAC 4173916 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 4173917 ATCCAGAAGGAATCGAC 4173933 Score = 100 bits (110), Expect = 2e-16 Identities = 309/470 (66%), Gaps = 6/470 (1%) Strand=Plus/Minus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 ||| ||||||||||||| || |||| | || |||||||| ||||| |||||||| || Sbjct 9912589 CTTATCCACGGTAAATTGAACGGCGTTGACAGCTGGCTTGGTACGCAAGTAGTACATTCC 9912530 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAG-GTGG 128896 || || | || | ||||| || | ||| || | || | |||||| ||| Sbjct 9912529 AGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCGGCGTAGCTTGG 9912470 Query 128897 GTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAG 128956 ||| | || ||| || | ||| || |||||| || || | || |||||||||| Sbjct 9912469 CTTGGC-CATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCACGATCGGCAG 9912411 Query 128957 CCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGT 129016 |||| | || | | ||| | || ||||| || || ||||||||| | | | Sbjct 9912410 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGCTCCTTGATAT 9912351 Query 129017 GTTTTGGTATTTCTTCAATGTTCTGCA-CGCTGCCGTTGTTTGCAATAATTTTGTTTCGC 129075 | ||| ||| || |||||||| | || | || ||||| ||||| | ||| | Sbjct 9912350 CGTCTGGAATTCCTGGGATGTTCTGAATCGAT-CCATTGTTGGCAATGAGGCGGTTCTTC 9912292 Query 129076 ATCTGTTCGTTGTACAAATTCAGT-TTGATCAAATCGTCGGTCAAGTATTTGTTTATTAC 129134 |||| ||| | || ||| | | | || |||||| | || || | ||| | | Sbjct 9912291 ATCTCATCGGTCCAC-AATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGACGAT 9912233 Query 129135 TTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGA 129194 ||| |||||||| | | || || ||| ||| ||||| |||| | ||||||| ||| Sbjct 9912232 TTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAATCGA 9912173 Query 129195 TTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCA 129244 ||| ||||| || | || ||||| || | || || ||||| ||||| Sbjct 9912172 TTCGTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAGCCA 9912123 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || ||| | | Sbjct 4175023 ATGCAGATCTTCGTCAAGACGCTTACCGGAAAGACTATCACCCTCGAGGTCGAAGCTTCG 4175082 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || ||||||||||| || || ||||| ||||| Sbjct 4175083 GACACTATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 4175142 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || ||| | |||||| || ||| |||| || |||||| Sbjct 4175143 CAACGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAAC 4175202 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 4175203 ATCCAGAAGGAGTCCAC 4175219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || ||||| |||| || ||||| ||| || || Sbjct 4173965 ATGCAGATCTTCGTCAAGACACTCACTGGAAAAACCATCACACTCGAAGTCGAAGCCTCC 4174024 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| ||||||||||| || |||||||| ||||| Sbjct 4174025 GACACCATTGAGAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAG 4174084 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||| | | || |||||||| || Sbjct 4174085 CAAAGATTGATCTTTGCCGGTAA 4174107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726122635355