Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 2e-11 >seq5 Length=14578851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || ||| | || || |||||||| || ||||| || || | Sbjct 4173736 AATGCAAATCTTCGTCAAGACACTCACTGGAAAAACCATCACTTTGGAAGTCGAGGCTTC 4173795 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||||| || || ||||| | || | |||| Sbjct 4173796 CGATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCA 4173855 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||| ||||| || || || || || || ||| || |||| | | || ||||| Sbjct 4173856 GCAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAA 4173915 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||||||||| |||||||| ||||| | || | |||||||| Sbjct 4173916 CATCCAGAAGGAATCGACTCTTCACTTGGTACTCCGCCTCAGAGGAGGA 4173964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358123198174918