Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 145 1e-29 >seq5 Length=14578851 Score = 145 bits (160), Expect = 1e-29 Identities = 204/283 (72%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 |||||||||| ||||||||| ||||| || ||||| ||||| | ||||| ||| ||||| Sbjct 11386316 GAGGCGCGCTTCTTCTACGGATTCCAAATCGCCATCGAGAATATTCACTCGGAGATGTAC 11386257 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | || || || | || ||||||| ||| ||||| | ||||||||| ||| Sbjct 11386256 TCAAAGCTCATCGAGACCTACATCCGCGATGAGAAGGAGCGCATGAAGCTGTTCAACGCC 11386197 Query 42621 ATG---GAGA-CGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT--- 42673 || ||| ||| | ||||||||||||||| ||||||||||| ||||| Sbjct 11386196 ATCTTCGAGTTCGAG----TTCATCAAGAAGAAGGCCGACTGGGCGCTTCGTTGGATTTC 11386141 Query 42674 CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCAT 42733 ||| | || | || |||||| ||| ||||| | || || |||||||||||||||| Sbjct 11386140 CGACA---CCAAGGCCTCGTTCGCCGAACGGCTGATCGCATTCGCCGCCGTCGAGGGCAT 11386084 Query 42734 CTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 |||||| || | ||||| || || |||||||||||| || Sbjct 11386083 CTTCTTTAGCGGATCGTTCGCATCGATTTTCTGGCTCAAGAAG 11386041 Score = 107 bits (118), Expect = 4e-18 Identities = 394/615 (64%), Gaps = 23/615 (4%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 |||||||| |||||||| || | |||||| || || ||||| || || | ||| Sbjct 9911995 CCCCACATATCAAACTGAAGTTGTCCCTTGGAAACTGGAGATCCCTCATATGTAGAGTAT 9911936 Query 244358 GGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 || || || | | |||| || || || | || | || |||||||||||||||||| Sbjct 9911935 GGTCCATCTCTTTCAGCCAACTCGCAACTAGCTTCCAATGCAGCGTAGTAGATGGTCTCG 9911876 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCT-TGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 ||||| ||||||| | || | ||||| || | | ||||| || | ||||| ||| Sbjct 9911875 AAGATTCTCTTGTTGAGATCTCTGGCCTGTGGAG-ATGTGAATGGATAACGCATCAACAT 9911817 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||| ||| || ||||| || || |||| ||||| || | || ||| |||| ||| Sbjct 9911816 GAAGCAGTCAGCGAGTCCTTGAACTCCGAGACCGATTGGACGATGGCGCATGTTCGAGTT 9911757 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 || || | || ||| ||||| |||| || | |||||| || || || || Sbjct 9911756 GCGAGCCTCTTCAATTGGATAATAGTTGACGTCAATGATCTTGTTCAGATTCTTTGTTAT 9911697 Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGT 244656 | | || || || ||| ||||||| ||| | || Sbjct 9911696 GACCTTGGTCACCTCAGCGAGCTTGACAAAGTCGAACTTTT---------------TGTC 9911652 Query 244657 GATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGA 244716 | | |||| || ||| | || | || || ||||| || || ||||| || | Sbjct 9911651 GTTAGTCACGAAACGGTTCAAAGCAATAGAAGCGAGATTGCAAACAGCAACCTCGTCTGG 9911592 Query 244717 GTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTG 244776 | ||||| || |||||| ||||| | ||| ||||||||| || |||| || || Sbjct 9911591 AGCAGAGTACTCGATAATCTCAGTGCACAAGTTGGAGCACTTGATAGTTCCCAAGTTTTG 9911532 Query 244777 GTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGA- 244835 || || |||||| ||| ||| ||||||||| ||| | || |||||||||| Sbjct 9911531 CTGGTTCGACTTGCGATTGGCGGCATCCTTGTAGGTGATGTATGGAAGTCCGGTCTCGAT 9911472 Query 244836 --GCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTT 244893 | | || ||| | | || | |||||| | | |||||| || || ||||| | Sbjct 9911471 TTGATTGGAGACAATG-TGC--TCCCAGAGCTTTCGAGCCTTCACTGTTTTGCGAACACG 9911415 Query 244894 GCCCTCTGCCTCGTA 244908 ||||| || ||||| Sbjct 9911414 TCCCTCGGCTTCGTA 9911400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334867843920