Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 154 3e-32 >seq5 Length=14578851 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || ||||| | || || |||||||| || || || | Sbjct 4175477 CCTCCACGGAGACGAAGGACAAGATGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGAC 4175418 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| ||||| ||||| |||||||| || | |||||| |||| Sbjct 4175417 AGGGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 4175358 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || |||||||| || | || | ||| ||| Sbjct 4175357 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACT 4175298 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||| || ||||||||||||||||| ||||||||| Sbjct 4175297 TCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4175250 Score = 134 bits (148), Expect = 3e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 288235 ATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATA 288294 ||| | | || ||| || || || | || |||||||||| || || |||||||| Sbjct 4175992 ATTTACATATCTCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATG 4175933 Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || ||||||| | ||||||||||| || | || ||||| || ||||||| ||||| Sbjct 4175932 TTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGC 4175873 Query 288355 TGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG 288414 || |||||||||||| || |||||||| || || || || || || || | || Sbjct 4175872 TGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCC 4175813 Query 288415 CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||| | ||||| ||||| ||||||| |||||||||||| || ||||| Sbjct 4175812 GAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 4175754 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| |||||||| | || || |||||||| || || |||| Sbjct 4175021 CCTCCACGGAGGCGAAGAACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAA 4174962 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | ||| ||||| |||||||| || | ||| || ||| Sbjct 4174961 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGA 4174902 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || || || || || ||||| || || || || | || | ||| ||| Sbjct 4174901 ATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTCTCGATGGTGTCCGAAGCTTCGACT 4174842 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||||||||| ||||||| ||||||||||| ||||||||| Sbjct 4174841 TCGAGGGTGATCGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCATT 4174794 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || ||||| || || | || ||||| |||||| Sbjct 4175213 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAG 4175154 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || ||| |||||||||||| || || ||||| || || || || || Sbjct 4175153 ATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTC 4175094 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || | ||| || ||||| ||||| ||||| ||||| || ||||||||| Sbjct 4175093 TCAATAGTGTCCGAAGCTTCGACCTCGAGGGTGATAGTCTTTCCGGTAAGCGTCTTGACG 4175034 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 4175033 AAGATCTGCAT 4175023 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| || ||||| || || | ||| ||||| |||||| Sbjct 1551633 TCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAG 1551692 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | || || ||| |||||||| || || ||||| || || || || || Sbjct 1551693 ATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTC 1551752 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| | || |||||||| | || ||||| || ||||||||||||||| Sbjct 1551753 TCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTTACCCGTCAGAGTCTTGACG 1551812 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1551813 AAGATTTGCAT 1551823 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| |||| ||||| || |||||||||||| || |||||||| || Sbjct 4174663 TTACCAGCGAAAATCAATCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTG 4174604 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || |||| || | ||| |||||||| ||||||||||| |||||| Sbjct 4174603 GCTTTGACATTCTCGATAGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTC 4174544 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 | ||||||||||| ||||||||| Sbjct 4174543 AATGTCTTGACGAAGATCTGCATT 4174520 Score = 102 bits (112), Expect = 2e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | ||||| | |||| || ||| || ||||| || ||||| | Sbjct 4173964 TCCTCCTCTGAGGCGGAGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGA 4173905 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| || || | || ||||| |||||||| || | ||| || ||| Sbjct 4173904 AAGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGG 4173845 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||| || || || |||||||| ||||| || || || || | |||| | || || Sbjct 4173844 GATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCGAC 4173785 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| || || || || || ||||||||||| || |||||| Sbjct 4173784 TTCCAAAGTGATGGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 4173736 Score = 102 bits (112), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 269149 ATGATCGGTATGAA-TGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT 269207 |||||||| ||||| |||||| || ||| || || ||||| ||||| || |||| | | Sbjct 11384146 ATGATCGGAATGAACTGCCGA-CTGATGTCCCAGTACATCGAGTTCGTCGCCGATCATCT 11384088 Query 269208 CTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGA 269267 || || ||||| | || || ||||||| |||||||| || | ||| ||||| Sbjct 11384087 GCTCCAGGAGCTCGGATGCGATAAGCTGTACAACGTCAAGAATCCATTTGACTTCATGGA 11384028 Query 269268 ACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACG 269327 || ||| |||| |||||||| ||||||||||| ||||| || ||| ||||| || Sbjct 11384027 GAACATCTCGATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGTTTCCGAGTATCAGCG 11383968 Query 269328 TCCTGGTGTAATG 269340 || || || ||| Sbjct 11383967 ACCGGGCGTCATG 11383955 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||||| | |||||| |||||||||||| || |||||||| || ||| Sbjct 4175618 CCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCT 4175559 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || |||| || | ||| ||||| | ||||| ||||| ||||||| | Sbjct 4175558 TTGACATTCTCAATAGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTCAAA 4175499 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| Sbjct 4175498 GTCTTGACGAAGATTTGCAT 4175479 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| |||||||| || || |||||||| || || || || || || | ||| | ||| Sbjct 4174075 TGGAATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTCTCAATGGTGTCGGAGGCTTC 4174016 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||||| ||||| || || || || || ||||||||||| ||||||||| Sbjct 4174015 GACTTCGAGTGTGATGGTTTTTCCAGTGAGTGTCTTGACGAAGATCTGCATT 4173964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648853043826