Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 5e-11 >seq5 Length=14578851 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 243565 ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTC 243624 || || ||||||| ||| ||| ||||||||||| ||||| ||||| | | || Sbjct 11384143 ATCGGAATGAACTGCCGACTGATGTCCCAGTACATCGAGTTCGTCGCCGATCATCTGCTC 11384084 Query 243625 ATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTC 243684 | ||| || | || || |||||||| |||||| || |||| ||| |||||| | Sbjct 11384083 CAGGAGCTCGGATGCGATAAGCTGTACAACGTCAAGAATCCATTTGACTTCATGGAGAAC 11384024 Query 243685 ATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCT 243744 || ||| | | || || || ||||||||||| ||||| || || ||||| || || Sbjct 11384023 ATCTCGATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGTTTCCGAGTATCAGCGACCG 11383964 Query 243745 GGTGTGATG 243753 || || ||| Sbjct 11383963 GGCGTCATG 11383955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102874814051450