Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 1e-15 seq4 95.1 1e-14 >seq5 Length=14578851 Score = 98.7 bits (108), Expect = 1e-15 Identities = 354/543 (65%), Gaps = 17/543 (3%) Strand=Plus/Minus Query 114791 TCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGA 114850 || || |||||||||||||| ||||| | ||||||||| |||| | || ||| || Sbjct 9911083 TCGACGCGCTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAACAAGTCACGAGCACGT 9911024 Query 114851 GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCAC 114910 | ||||| || || || | | | ||| || | |||||| |||||||| Sbjct 9911023 TCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAGATATCGGCGTGCCAT 9910964 Query 114911 GGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATAC 114964 || |||| ||| | |||| || | ||| | || ||| | || | || || Sbjct 9910963 GGCTCCAAGTAGATGGCGAATG-CTCCTG--GTCGTTTGTTACCTCCTTGATCAACGTAA 9910907 Query 114965 CTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTC 115024 | || ||| || | || ||||||||||| |||| |||| ||| ||||| || Sbjct 9910906 CGAGCGGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGATGTTCCATTGGTT 9910847 Query 115025 CCCCGAAT-AC-GAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTG 115082 || ||| || ||| | | | || | || | || | | | ||| || || || | Sbjct 9910846 CCGGCAATCACTGAGCC--AGTTGCACGGATCTTGTGCACATTGAGACCGATGCCTCCAG 9910789 Query 115083 CCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGT-CA 115141 | | ||| || || | ||||||| | | | | || ||||||| ||| ||||||| | Sbjct 9910788 CACTCTTCGAAATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCGAGAATCGAGTCCT 9910729 Query 115142 CCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAG 115201 | || || | | || |||||| ||||| ||||| | || |||| ||||||| Sbjct 9910728 CGCTCATCGTCAACAA-GAAGCATGAAGACATCTGTGGACGGCACGTTCCAGAGTTGAAG 9910670 Query 115202 AGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTTATCGTAGGTCTCCAAGAC 115260 || ||||| | || || | | |||| || ||||||| | ||| ||||| | | | Sbjct 9910669 AGAGTTGGAGAGGCATGTGT-CATGTACCGTTCGGACATCAAGTTGTACGTCTCAATGGC 9910611 Query 115261 GGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGT 115320 ||||| |||||||| ||||| || || || | ||| ||||| | ||| | || ||| | Sbjct 9910610 GGCGGAAATGTCTTTTCCGTGGATTCCAATGGCGACACGCATCAGCATTTGCTGTGGTCT 9910551 Query 115321 TTC 115323 ||| Sbjct 9910550 TTC 9910548 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 125767 AACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAA 125826 ||| ||||||||||||||||| ||||| || || | ||| |||||||| || ||||| Sbjct 11383982 AACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCATGAAGTCAAA 11384041 Query 125827 TGGGTTCTTTGAGTTCCA-AATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGA 125885 ||| ||||| ||| | | | | ||| || | || | ||| ||| |||| | || Sbjct 11384042 TGGATTCTTGACGTTGTACAGCTTATCGCA-TCCGAGCTCCTGGAGCAGATGATCGGCGA 11384100 Query 125886 CGTACTCAATGTACTCAGACATCTTCTCAG-AGTTCATACCGATGAGGTTACATGGGAGC 125944 || |||| ||||||| |||||| || | ||||||| ||||| | || | ||||| Sbjct 11384101 CGAACTCGATGTACTGGGACATC-AGTCGGCAGTTCATTCCGATCATGTCAACGGGGAGG 11384159 Query 125945 GCGTCCAAGATGAACCCCTTCTCAAT 125970 || || || |||| ||| |||||| Sbjct 11384160 GCTTCGGTGAGGAACTCCTGCTCAAT 11384185 >seq4 Length=16627154 Score = 95.1 bits (104), Expect = 1e-14 Identities = 254/386 (66%), Gaps = 13/386 (3%) Strand=Plus/Plus Query 172582 GAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAACCATC 172641 ||||||||||||||| | ||| | | || | || |||||| || ||||||||||| || Sbjct 8906757 GAGGGATGGCCAGAAATGGTGAACGAAGTTGATGACGAGACCTTTGATGTGTGAACCGTC 8906816 Query 172642 GTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAG---CTCGGAAACATCTTG 172698 | ||| ||| | ||| | ||| | | || || || || || | || |||| | Sbjct 8906817 CTGATCTTGATCAGCCATCACCATCACCTTTCCGTAACGGAGAGTCTTGAAATCATCATC 8906876 Query 172699 ------ATACTCCTTACCCTGT--TGAAGACCCAAGATCTTCTTGAGATCATTGAACTCT 172750 ||||| || | ||| ||||| || | ||||| | | | |||| || Sbjct 8906877 CGTCTCATACTTTTT--CTTGTACTGAAGTCCAAGAATCTTGATCATTGCGTTGATTTCA 8906934 Query 172751 TGGTTTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGA 172810 || | || |||| || | | ||||| || || | ||| ||||| || Sbjct 8906935 GCATTATCCGCGATTTGCTTCATATTACCGTCGCGAACGTTGAGAAGCTTTCCACGAAGT 8906994 Query 172811 GGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTC 172870 ||||| || ||||| | ||||||||| || | ||||| || | ||| || | ||||| Sbjct 8906995 GGGAAGACTCCGTACTTATCACGACCGACGATCGAAAGTCCGGAAACCGCCAAAGTCTTA 8907054 Query 172871 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTG 172930 || ||||| ||||| || | |||||||||||||| | || | | || || || | | Sbjct 8907055 GCAGAATCTCCCTCAGTAAGGATGAGCGTACACTGTTGCGAATTTTTTGTTCCAGCGTCG 8907114 Query 172931 TTCGCATCGTCCAACTTGGGAATACC 172956 || || || || | ||| |||||||| Sbjct 8907115 TTGGCGTCCTCGAGCTTTGGAATACC 8907140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350859640360