Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq5 116 4e-21 seq11 86.0 7e-12 seq9 86.0 7e-12 >seq5 Length=14578851 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | |||||| || | ||| |||||| || || ||||| || | Sbjct 4173735 CCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 4173676 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | | || || |||||||| || ||||| ||||||| ||||||||| | ||| Sbjct 4173675 AGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 4173616 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| |||||| ||||| || | | || ||| | ||||| Sbjct 4173615 ATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACC 4173556 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || || | ||| || || ||||||||||| Sbjct 4173555 TCCAAGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4173509 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | || | ||||| || | || ||||| || || ||||| || | Sbjct 4173963 CCTCCTCTGAGGCGGAGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAA 4173904 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | | || || |||||||| || ||||| ||||||| ||||||||| | ||| Sbjct 4173903 AGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 4173844 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| |||||| ||||| || | | || ||| | || || Sbjct 4173843 ATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCGACT 4173784 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||||||||| || || || ||||| || |||||||||||| Sbjct 4173783 TCCAAAGTGATGGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 4173736 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| || | || ||| || |||| || |||||||| ||||| || Sbjct 4175945 CTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCAAA 4175886 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||| | ||| | | ||||||||| ||| || |||| | Sbjct 4175885 GATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 4175826 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | ||| || || | |||||||| || || || | ||||| || Sbjct 4175825 CTCGATTGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTCAAAGTCTTGAC 4175766 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 4175765 GAAGATTTGCAT 4175754 >seq11 Length=19495157 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 56994 TATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 ||||||||| |||||| |||| | ||| |||||| |||||| | ||||||| || Sbjct 13235667 TATGAAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGG 13235726 Query 57054 ATACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||||||| Sbjct 13235727 ATACTCACCACTATACTACCGAGGA 13235751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| | ||||||| |||| | ||| |||||| |||||| | |||||||||| |||| Sbjct 3398408 AAAGAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGGCGCGGATAC 3398467 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 3398468 TCACCACTATACTACCGAGGA 3398488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 17426185 AAAAAGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 17426126 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 17426125 TCACCACTATACTACCGAGGA 17426105 >seq9 Length=17485439 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/97 (80%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 56983 AAATTA-ACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCG 57041 |||||| | ||| | ||||| ||||||| |||| | ||| |||||| |||||| | | Sbjct 13249245 AAATTATAATTTTTTTAAAAAGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATG 13249304 Query 57042 TGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||| || ||||||||||||||||||||||||| Sbjct 13249305 TGACAGACGCGGATACTCACCACTATACTACCGAGGA 13249341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 11755059 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 11755118 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 11755119 TCACCACTATACTACCGAGGA 11755139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 13238672 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 13238731 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 13238732 TCACCACTATACTACCGAGGA 13238752 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/95 (80%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 56985 ATTAACGTTTATGAAAAAT-TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTG 57043 ||||| || | |||||| ||||||| |||| | ||| |||||| |||||| | ||| Sbjct 13245350 ATTAAATTTAAAAAAAAATATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTG 13245409 Query 57044 ACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||| || ||||||||||||||||||||||||| Sbjct 13245410 ACAGACGCGGATACTCACCACTATACTACCGAGGA 13245444 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAAT-TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || ||| Sbjct 16829607 AAAAATGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATA 16829548 Query 57057 CTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||| Sbjct 16829547 CTCACCACTATACTACCGAGGA 16829526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543210308011280