Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 134 1e-26 >seq5 Length=14578851 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||||| || ||||| |||||||| || | | ||||| |||| Sbjct 4175965 AGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCC 4175906 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || | ||||||||||| || || |||||||| || || Sbjct 4175905 TCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCC 4175846 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||| || || || ||||| | ||| | |||| Sbjct 4175845 TGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTC 4175786 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||||||| || ||||| |||||||| Sbjct 4175785 TTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 4175754 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| |||||||| || || |||||||| || | | || | | || ||||||||| Sbjct 4173939 TGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCAAGCTGC 4173880 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | ||||| | ||||||||| || || ||||| || || ||||| | |||| Sbjct 4173879 TTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGA-TTTT 4173821 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| ||| | ||||| || || ||||| | ||| | ||| || || || Sbjct 4173820 GGCTTTGACATTCTCGATGGTATCGGAAGCCTCGACTTCCAAAGTGATGGTTTTTCCAGT 4173761 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | || || ||||| ||||||||| Sbjct 4173760 GAGTGTCTTGACGAAGATTTGCATT 4173736 Score = 105 bits (116), Expect = 7e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || ||||| ||||||||||| | | || || | || Sbjct 4175007 AAGAACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATC 4174948 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || ||||| ||||| | ||||| | ||||||||| || |||||||| || || || Sbjct 4174947 CTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTC 4174888 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | || ||||| ||| ||| | || || || || ||||| | || | | Sbjct 4174887 TTG-AATCTTGGCTTTGACATTCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCG 4174829 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| |||||||| || || ||||| || |||||| Sbjct 4174828 TCTTTCCGGTCAATGTCTTGACGAAGATCTGCATT 4174794 Score = 102 bits (112), Expect = 8e-17 Identities = 367/566 (65%), Gaps = 21/566 (4%) Strand=Plus/Minus Query 154872 GGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACC 154931 || |||||||| ||||| || | || || ||||| ||||| || | ||| |||||| Sbjct 9911113 GGGCACATCAACGACCAATCTTGATCTTTTTCGACGCGCTTCATGAAGAGATCTGGCACC 9911054 Query 154932 CACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTT--A 154989 || | ||| | ||||| ||||| || || ||||| | || |||| |||| | Sbjct 9911053 CAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTT---CTTTCGA 9910997 Query 154990 AATTCAAAAAA-TCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCT 155048 | ||| ||| || | || ||||||||||| ||||| || || | ||| | || ||| Sbjct 9910996 AGAGCAACAAACTCGAAGATATCGGCGTGCCATGGCTCCAAGTAGATGGCGAATGCTCCT 9910937 Query 155049 TTGCGT---TTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAAT 155105 ||| || ||||||||||| |||| ||| | || ||||| || || | || | Sbjct 9910936 GGTCGTTTGTTACCTCCTTGATCAACGTAACGAGCGGTGTTGTTGTAGACACGAAGCATT 9910877 Query 155106 GGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCT 155165 ||| | || ||| || || ||||| || ||| | ||| ||||| Sbjct 9910876 GGTATGAGTCCATTGGATGTTCCATTGGTTCCGGCAATCACTGAGCCAGTTGCACGGATC 9910817 Query 155166 TTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAA 155225 || || ||||| | || | ||||| | || || || | || || | | |||| Sbjct 9910816 TTGTGCACATTGAGACCGATGCCTCCAGCACTCTTCGAAATCAGAGCGCACTGCTTCAAA 9910757 Query 155226 GTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAAT 155285 || ||||| ||||| || ||| || ||| |||||||||||| || ||||| | Sbjct 9910756 GTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAGCATGAAGACATC 9910697 Query 155286 TGAGGTTGAGGGCA---GCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTT-- 155340 | || || |||| || | || | || ||| || ||||| ||| | Sbjct 9910696 T---GTGGACGGCACGTTCCAGAGTTGAAGAGAGTTGGAGAGGCATGTGT---CATGTAC 9910643 Query 155341 TGTT-GGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCG 155399 ||| || | |||||||| || || ||||||||| |||||| ||||| || || Sbjct 9910642 CGTTCGGACATCAAGTTGTACGTCTCAATGGCGGCGGAAATGTCTTTTCCGTGGATTCCA 9910583 Query 155400 ATCGCCACGCGCATCAGCATGTGTTG 155425 || || || ||||||||||| || || Sbjct 9910582 ATGGCGACACGCATCAGCATTTGCTG 9910557 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | || | | || ||||||||||| ||| Sbjct 4173705 GTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCAAGCTGCTTTCCG 4173646 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| | ||||||||| || || ||||| || || ||||| | |||| ||||| Sbjct 4173645 GCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGA-TTTTGGCTTT 4173587 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | ||||| || ||||| || | || | || || || ||||| || Sbjct 4173586 GACATTCTCGATGGTATCGGAAGCCTCCACCTCCAAGGTGATAGTTTTTCCTGTCAACGT 4173527 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| ||||| |||||||| Sbjct 4173526 TTTGACGAAGATTTGCAT 4173509 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || ||||| ||||||||||| | | ||| | | || Sbjct 4175463 AAGGACAAGATGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGACAGGGTTCTACCATC 4175404 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| ||||| | ||||| | ||| ||||| || || |||||||| || || Sbjct 4175403 TTCCAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTATC 4175344 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || ||| || || ||||| | ||| | ||| Sbjct 4175343 CTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACTTCGAGAGTGATGGT 4175284 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || |||| ||| || ||||| || |||||| Sbjct 4175283 CTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4175250 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || || || | || || || ||||| ||| Sbjct 1551627 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCG 1551686 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | |||||||| || ||||||||||| || ||||| || || ||| Sbjct 1551687 GCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTG 1551746 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| ||| || ||||| | | | ||||| || |||| ||| Sbjct 1551747 ACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTTACCCGTCAGAGTC 1551806 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 1551807 TTGACGAAGATTTGCAT 1551823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642507879480