Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5 120 3e-22 >seq5 Length=14578851 Score = 120 bits (132), Expect = 3e-22 Identities = 288/433 (67%), Gaps = 2/433 (0%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCC-CGGTGCCACAGATGTCTTCGTGTTTCCT 93950 ||| | || || || |||||| | || || | || |||||||||||||| || ||| | Sbjct 9910656 GCCTCTCCAACTCTCTTCAACTCTGGAACGTGCCGT-CCACAGATGTCTTCATGCTTCTT 9910714 Query 93951 GATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | |||||| | | ||||| || |||||| | ||||| | ||| | || || Sbjct 9910715 GTTGACGATGAGCGAGGACTCGATTCTCGGAATCTACGACACTTTGAAGCAGTGCGCTCT 9910774 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 || || || || || || ||||| ||| ||| ||| | | ||||| | || || Sbjct 9910775 GATTTCGAAGAGTGCTGGAGGCATCGGTCTCAATGTGCACAAGATCCGTGCAACTGGCTC 9910834 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 || ||| |||||||| || ||||| || ||| | || ||||| || |||| ||| Sbjct 9910835 AGTGATTGCCGGAACCAATGGAACATCCAATGGACTCATACCAATGCTTCGTGTCTACAA 9910894 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| | || || ||||| || || || ||| | | || | ||||| |||| Sbjct 9910895 CAACACCGCTCGTTACGTTGATCAAGGAGGTAACAAACGACCAGGAGCATTCGCCATCTA 9910954 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 | ||||| |||||||| || | | || | | || ||||||||| ||| Sbjct 9910955 CTTGGAGCCATGGCACGCCGATATCTTCGAGTTTGTTGCTCTTCGAAAGAACACCGGACC 9911014 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || ||| | || | ||| | |||| ||||||||||||||||| || || ||||| Sbjct 9911015 AGAAGAGGAACGTGCTCGTGACTTGTTCTTGGCTCTCTGGGTGCCAGATCTCTTCATGAA 9911074 Query 94311 ACGCGTCGAGAAA 94323 |||||||| ||| Sbjct 9911075 GCGCGTCGAAAAA 9911087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720930457320