Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 4e-14 >seq5 Length=14578851 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 || || || || || || ||||||| | || | || || || || || || | || Sbjct 11384197 GACGCTGTCGCCATTGAGCAGGAGTTCCTCACCGAAGCCCTCCCCGTTGACATGATCGGA 11384138 Query 52674 ATGAACGCGCAGTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 |||||| || | | |||| | ||||||||||||| || || |||| |||| | | | Sbjct 11384137 ATGAACT-GCCGACTGATGTCCCAGTACATCGAGTTCGTCGCCGATCATCTGCTCCAGGA 11384079 Query 52733 GCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791 |||||| || | ||| | ||||| ||||| ||||| || ||| | ||||| | Sbjct 11384078 GCTCGGAT-GCGATAAGCTGTACAACGTCAAGAATCCATTTGACTTCATGGAGAACATCT 11384020 Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAGCG 52843 || | || || ||||||||||| ||||||||||| || ||||||| |||| Sbjct 11384019 CGATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGTTTCCGAGTATCAGCG 11383968 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | |||||||| || |||||||||||| Sbjct 1551597 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1551656 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| || |||| |||| | | || ||||| || || Sbjct 1551657 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 1551716 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | ||| |||| | ||| || Sbjct 1551717 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 1551776 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAAT 138624 |||| | | || ||||| |||||||| || || || || |||||| || | ||| Sbjct 1551777 TCGAGGGGAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAAAT 1551833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| ||| | |||||| ||||||||||| || |||| Sbjct 4174988 GACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCG 4174929 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| ||||| || || || || || ||||| ||| | || | ||| | Sbjct 4174928 AAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTC-TTGAATCTTGGCTTTGAC 4174870 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | | || || |||| || | ||| || || |||| || || Sbjct 4174869 ATTCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAATGTCTT 4174810 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 4174809 GACGAAGATCTGCAT 4174795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | | ||||||||||| |||||||||||| | Sbjct 4175980 CCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAC 4175921 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || || || | | |||| | ||||| ||||| || || Sbjct 4175920 AAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGG 4175861 Query 138508 ATACCTTCTTTGTC 138521 || ||||| ||||| Sbjct 4175860 ATTCCTTCCTTGTC 4175847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260123396240